View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20656_high_21 (Length: 217)
Name: NF20656_high_21
Description: NF20656
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20656_high_21 |
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Alignment Details
Target: chr3 (Bit Score: 113; Significance: 2e-57; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 35 - 190
Target Start/End: Complemental strand, 45737181 - 45737022
Alignment:
| Q |
35 |
caatagaaggaataaagtattaatgtgtgaggtaaatttatgggactcaatataagtattttatagatcacaatagagacccataaaataacaatagata |
134 |
Q |
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| T |
45737181 |
caatagaaggactaaagtattaatgtgtgaggtaaatttatgggactcaatataattattttatagatcataataga-acccataaaataacaatagata |
45737083 |
T |
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| Q |
135 |
gagttcatcattgaaggtactctaaaactccaag-----agacaaggttgtgaggttgtac |
190 |
Q |
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| T |
45737082 |
gagttcatcattaaaggtattctaaaactccaagtacaaagacaaggttgtgaggttgtac |
45737022 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 35 - 104
Target Start/End: Complemental strand, 49159666 - 49159599
Alignment:
| Q |
35 |
caatagaaggaataaagtattaatgtgtgaggtaaatttatgggactcaatataagtattttatagatca |
104 |
Q |
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| T |
49159666 |
caataaaaggaataaagtattgatgtg--aggtaaatttgtgggactcaatatgagtattttatagatca |
49159599 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 39 - 105
Target Start/End: Complemental strand, 5335180 - 5335114
Alignment:
| Q |
39 |
agaaggaataaagtattaatgtgtgaggtaaatttatgggactcaatataagtattttatagatcac |
105 |
Q |
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| T |
5335180 |
agaaggaataaagcattaatgtttgaagtaaatttgtgggacctaacatgagtattttatagatcac |
5335114 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 119 - 159
Target Start/End: Original strand, 38282323 - 38282363
Alignment:
| Q |
119 |
aaaataacaatagatagagttcatcattgaaggtactctaa |
159 |
Q |
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| T |
38282323 |
aaaataacaatcgagagagttcatcattgaaggtgctctaa |
38282363 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 41 - 105
Target Start/End: Complemental strand, 34374754 - 34374690
Alignment:
| Q |
41 |
aaggaataaagtattaatgtgtgaggtaaatttatgggactcaatataagtattttatagatcac |
105 |
Q |
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| T |
34374754 |
aaggaacaaagtattaatgtgtgaggtaaatttgtggaaccaaatatgagtaatttaaagatcac |
34374690 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 97
Target Start/End: Complemental strand, 33997789 - 33997737
Alignment:
| Q |
45 |
aataaagtattaatgtgtgaggtaaatttatgggactcaatataagtatttta |
97 |
Q |
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| T |
33997789 |
aataaaatattaatatgtgtggtaaacttgtgggacccaatataagtatttta |
33997737 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 97
Target Start/End: Original strand, 7393847 - 7393891
Alignment:
| Q |
53 |
attaatgtgtgaggtaaatttatgggactcaatataagtatttta |
97 |
Q |
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| T |
7393847 |
attaatatgtgaggtaaatttatgggatccaatataagtttttta |
7393891 |
T |
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