View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20656_high_3 (Length: 467)
Name: NF20656_high_3
Description: NF20656
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20656_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 330; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 13 - 350
Target Start/End: Original strand, 14729229 - 14729566
Alignment:
| Q |
13 |
aatatcagcattttgtacttgaacgcaaagtctttctacatggttagatgtgtgaagtagtttgtccacccaatctatgaggcaattttccgactcctgt |
112 |
Q |
| |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14729229 |
aatatcagctttttgtacttgaacgcaaagtctttctacatggttagatgtgtgaagtagtttgtccacccaatctatgaggcaattttccgactcctgt |
14729328 |
T |
|
| Q |
113 |
tctggctttgatacatccggattacaagaaacttgaaaatcaaagatggataaatgtgtccacaagtatttccactttgtagctaatatggaagttctta |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14729329 |
tctggctttgatacatccggattacaagaaacttgaaaatcaaagatggataaatgtgtccacaagtatttccactttgtagctaatatggaagttctta |
14729428 |
T |
|
| Q |
213 |
cagcatctttagtagggagtaaagaaagaatatgaagaagaacagcctcgggtaattcactcatcatatcttccatatcacctatatcatgtctttggag |
312 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
14729429 |
cagcatctttagtagggagtaaagaaagaatatgaagaagaacagcctcgggtaattcacttatcatatcttccatatcacctatatcatgtctttggag |
14729528 |
T |
|
| Q |
313 |
cttatgtaaatttgatgatgacattgtagcagcctgtt |
350 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
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| T |
14729529 |
cttatgtaaatttgatgatgacattgtagcagcctgtt |
14729566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 194 - 242
Target Start/End: Complemental strand, 1095107 - 1095059
Alignment:
| Q |
194 |
gctaatatggaagttcttacagcatctttagtagggagtaaagaaagaa |
242 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||| ||||||| |
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|
| T |
1095107 |
gctaatatggaagttcttacagcatctttggtagggagtaacgaaagaa |
1095059 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 409 - 453
Target Start/End: Original strand, 14729625 - 14729669
Alignment:
| Q |
409 |
tcttagacattttcacaaacatttacaaggcactcatgaactatg |
453 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
14729625 |
tcttagacattttcccaaacatttacaaggcactcatgaactatg |
14729669 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 183 - 245
Target Start/End: Complemental strand, 7638471 - 7638409
Alignment:
| Q |
183 |
tccactttgtagctaatatggaagttcttacagcatctttagtagggagtaaagaaagaatat |
245 |
Q |
| |
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|||||||||| ||||||| ||||||||||| | ||||||| |||||||| ||||| ||||||| |
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| T |
7638471 |
tccactttgttgctaatacggaagttcttataacatctttggtagggagcaaagatagaatat |
7638409 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 152 - 254
Target Start/End: Original strand, 14740897 - 14740999
Alignment:
| Q |
152 |
tcaaagatggataaatgtgtccacaagtatttccactttgtagctaatatggaagttcttacagcatctttagtagggagtaaagaaagaatatgaagaa |
251 |
Q |
| |
|
||||||| ||||| || |||||||||||| ||||||||| | |||||| |||||||| || || ||||| || | ||||||||||||||||| | ||| |
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|
| T |
14740897 |
tcaaagacagataattgagtccacaagtatctccactttggtgataatattgaagttctaaccgcctctttggttgagagtaaagaaagaatataatgaa |
14740996 |
T |
|
| Q |
252 |
gaa |
254 |
Q |
| |
|
||| |
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|
| T |
14740997 |
gaa |
14740999 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 330; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 13 - 350
Target Start/End: Complemental strand, 17594258 - 17593921
Alignment:
| Q |
13 |
aatatcagcattttgtacttgaacgcaaagtctttctacatggttagatgtgtgaagtagtttgtccacccaatctatgaggcaattttccgactcctgt |
112 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17594258 |
aatatcagctttttgtacttgaacgcaaagtctttctacatggttagatgtgtgaagtagtttgtccacccaatctatgaggcaattttccgactcctgt |
17594159 |
T |
|
| Q |
113 |
tctggctttgatacatccggattacaagaaacttgaaaatcaaagatggataaatgtgtccacaagtatttccactttgtagctaatatggaagttctta |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
17594158 |
tctggctttgatacatccggattacaagaaacttgaaaatcaaagatggataaatgtgtccacaagtatttccactttgtagctaatatggaagttctta |
17594059 |
T |
|
| Q |
213 |
cagcatctttagtagggagtaaagaaagaatatgaagaagaacagcctcgggtaattcactcatcatatcttccatatcacctatatcatgtctttggag |
312 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
17594058 |
cagcatctttagtagggagtaaagaaagaatatgaagaagaacagcctcgggtaattcactaatcatatcttccatatcacctatatcatgtctttggag |
17593959 |
T |
|
| Q |
313 |
cttatgtaaatttgatgatgacattgtagcagcctgtt |
350 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
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|
| T |
17593958 |
cttatgtaaatttgatgatgacattgtagcagcctgtt |
17593921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 194 - 242
Target Start/End: Original strand, 9891799 - 9891847
Alignment:
| Q |
194 |
gctaatatggaagttcttacagcatctttagtagggagtaaagaaagaa |
242 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||| ||||||| |
|
|
| T |
9891799 |
gctaatatggaagttcttacagcatctttggtagggagtaacgaaagaa |
9891847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 409 - 453
Target Start/End: Complemental strand, 17593862 - 17593818
Alignment:
| Q |
409 |
tcttagacattttcacaaacatttacaaggcactcatgaactatg |
453 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
17593862 |
tcttagacattttcacaaacatttacaacgcactcatgaactatg |
17593818 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 68; Significance: 3e-30; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 147 - 346
Target Start/End: Original strand, 31219136 - 31219335
Alignment:
| Q |
147 |
gaaaatcaaagatggataaatgtgtccacaagtatttccactttgtagctaatatggaagttcttacagcatctttagtagggagtaaagaaagaatatg |
246 |
Q |
| |
|
|||||||||||| || ||| || |||||||||||| |||||||||| |||||||| |||||||||||||| |||| |||| ||| ||||||||||| |
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|
| T |
31219136 |
gaaaatcaaagacgggtaattgggtccacaagtatctccactttgttgctaatatagaagttcttacagcctcttccgtagagaggcgagaaagaatata |
31219235 |
T |
|
| Q |
247 |
aagaagaacagcctcgggtaattcactcatcatatcttccatatcacctatatcatgtctttggagcttatgtaaatttgatgatgacattgtagcagcc |
346 |
Q |
| |
|
| ||||| |||| ||||| || || |||||||||| |||||| | |||| || |||||||||||||||| ||||||||||||| ||||||| |||| |
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|
| T |
31219236 |
ataaagaattccctcaggtaaatcgctaatcatatctttcatatcgaccatatgatatctttggagcttatgtgaatttgatgatgagattgtagaagcc |
31219335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 170 - 267
Target Start/End: Original strand, 31239859 - 31239956
Alignment:
| Q |
170 |
gtccacaagtatttccactttgtagctaatatggaagttcttacagcatctttagtagggagtaaagaaagaatatgaagaagaacagcctcgggtaa |
267 |
Q |
| |
|
|||||||| | ||||||||| |||| |||||||||||||||||||||||||| |||||||| || |||||||||||||||||||| |||||||||| |
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|
| T |
31239859 |
gtccacaattgtttccacttcttagccaatatggaagttcttacagcatctttcgtagggagcaatgaaagaatatgaagaagaacgccctcgggtaa |
31239956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 170 - 267
Target Start/End: Original strand, 31256356 - 31256453
Alignment:
| Q |
170 |
gtccacaagtatttccactttgtagctaatatggaagttcttacagcatctttagtagggagtaaagaaagaatatgaagaagaacagcctcgggtaa |
267 |
Q |
| |
|
|||||||| | ||||||||| |||| |||||||||||||||||||||||||| |||||||| || |||||||||||||||||||| |||||||||| |
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|
| T |
31256356 |
gtccacaattgtttccacttcttagccaatatggaagttcttacagcatctttcgtagggagcaatgaaagaatatgaagaagaacgccctcgggtaa |
31256453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 170 - 282
Target Start/End: Original strand, 54220380 - 54220492
Alignment:
| Q |
170 |
gtccacaagtatttccactttgtagctaatatggaagttcttacagcatctttagtagggagtaaagaaagaatatgaagaagaacagcctcgggtaatt |
269 |
Q |
| |
|
|||||||||| |||||||||| | |||||||||| ||| ||||||||||||| ||||||| |||||||||||||| ||||||||| |||| ||||| | |
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|
| T |
54220380 |
gtccacaagtgtttccactttttcactaatatggaggtttttacagcatctttggtagggactaaagaaagaatatcaagaagaacgtcctcaggtaagt |
54220479 |
T |
|
| Q |
270 |
cactcatcatatc |
282 |
Q |
| |
|
|||| |||||||| |
|
|
| T |
54220480 |
cactaatcatatc |
54220492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 145 - 282
Target Start/End: Original strand, 31274742 - 31274879
Alignment:
| Q |
145 |
ttgaaaatcaaagatggataaatgtgtccacaagtatttccactttgtagctaatatggaagttcttacagcatctttagtagggagtaaagaaagaata |
244 |
Q |
| |
|
|||||||||||||| ||||| | |||||||| || ||||||| | ||||| | ||||||||||||| |||||| |||| ||||||||||||||| |
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|
| T |
31274742 |
ttgaaaatcaaagacagataagtaggtccacaaatacctccacttctttgctaacacggaagttcttacaacatcttcgataggtagtaaagaaagaata |
31274841 |
T |
|
| Q |
245 |
tgaagaagaacagcctcgggtaattcactcatcatatc |
282 |
Q |
| |
|
|||||||||||| |||| ||||| ||||| || ||||| |
|
|
| T |
31274842 |
tgaagaagaacaccctcaggtaaatcactaattatatc |
31274879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 194 - 254
Target Start/End: Original strand, 31278605 - 31278665
Alignment:
| Q |
194 |
gctaatatggaagttcttacagcatctttagtagggagtaaagaaagaatatgaagaagaa |
254 |
Q |
| |
|
|||||||||||||||| ||| |||||||| | ||||||||| |||||||| ||| |||||| |
|
|
| T |
31278605 |
gctaatatggaagttcctacggcatctttggcagggagtaacgaaagaatgtgatgaagaa |
31278665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 61; Significance: 5e-26; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 170 - 282
Target Start/End: Complemental strand, 16130691 - 16130579
Alignment:
| Q |
170 |
gtccacaagtatttccactttgtagctaatatggaagttcttacagcatctttagtagggagtaaagaaagaatatgaagaagaacagcctcgggtaatt |
269 |
Q |
| |
|
|||||||||| |||||||| | |||| |||||||||||||||| ||||||| || ||||||||||||||||||||||||||||| ||||| ||||| | |
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|
| T |
16130691 |
gtccacaagtgcttccacttctttgctagtatggaagttcttacaacatctttggtcgggagtaaagaaagaatatgaagaagaacggcctcaggtaagt |
16130592 |
T |
|
| Q |
270 |
cactcatcatatc |
282 |
Q |
| |
|
|||| |||||||| |
|
|
| T |
16130591 |
cactaatcatatc |
16130579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 146 - 246
Target Start/End: Original strand, 40451649 - 40451749
Alignment:
| Q |
146 |
tgaaaatcaaagatggataaatgtgtccacaagtatttccactttgtagctaatatggaagttcttacagcatctttagtagggagtaaagaaagaatat |
245 |
Q |
| |
|
||||||||| ||| |||||| || ||||||||||| |||||||||| ||||||||||| ||| | |||||||| || || | ||| || |||||||||| |
|
|
| T |
40451649 |
tgaaaatcatagacggataattgggtccacaagtacctccactttgttgctaatatggatgttttgacagcatccttggtggagagaaatgaaagaatat |
40451748 |
T |
|
| Q |
246 |
g |
246 |
Q |
| |
|
| |
|
|
| T |
40451749 |
g |
40451749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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