View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20656_high_4 (Length: 454)
Name: NF20656_high_4
Description: NF20656
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20656_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 381; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 1 - 440
Target Start/End: Complemental strand, 45344822 - 45344382
Alignment:
| Q |
1 |
cttctgacttaagtatatgccgtcggaattttgcagaacttctacaccaaggaaatatctcatctaccctaaatccgtcatatcaaactcaatcttcatt |
100 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| |
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| T |
45344822 |
cttctgacttaagtatatgccgtctgaattttgcagaacttctacaccaaggaaatatttcatcttccctaaatccgtcatatcaaactcaatcttcatt |
45344723 |
T |
|
| Q |
101 |
gacttcttaaagctttcaaacatgcatgcatcattcccagtaaagattaaatcatcaacatacaaactcacaattaaaattcttttacctcctgttttga |
200 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45344722 |
gacatcttaaagctttcaaacatgcatgcatcattcccagtaaagattaaatcatcaacatacaaactcacaattaaaattcttttacctcctgttttga |
45344623 |
T |
|
| Q |
201 |
caaagagagtatgatcatgattgcatctttcaaatccttccttagcaaaatatgattcaattttactata-ccagctcgcggtgcttgctttaacccata |
299 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| | |||||| |||||||||||||||||||| |
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| T |
45344622 |
caaagagagtatgatcatgattgcatctttcaaatcattccttagcaaaatatgattcaattttactatatcaagctcgtggtgcttgctttaacccata |
45344523 |
T |
|
| Q |
300 |
taaagctttcttaagcttgtagaccttttcttcttcaccccttcggacataccccaatggttgttctacatacacgtcctctattaactcaccatgaaga |
399 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| || ||||||| |
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| T |
45344522 |
taaagctttcttaagcttgtagaccttttctttttcaccccttcggacataccctaatggatgttctacatacacgtcctctattaacttactatgaaga |
45344423 |
T |
|
| Q |
400 |
aatgcgcttttgacatcgagctggtacacactccacccctt |
440 |
Q |
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| T |
45344422 |
aatgcgcttttgacatcgagttggtacacactccacccctt |
45344382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 256 - 308
Target Start/End: Original strand, 10781926 - 10781979
Alignment:
| Q |
256 |
ttcaattttactatacca-gctcgcggtgcttgctttaacccatataaagcttt |
308 |
Q |
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| T |
10781926 |
ttcaattttactataccaagctcttggagcttgctttaaaccatataaagcttt |
10781979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 129 - 176
Target Start/End: Original strand, 1154906 - 1154953
Alignment:
| Q |
129 |
catcattcccagtaaagattaaatcatcaacatacaaactcacaatta |
176 |
Q |
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||||||| |||||||| || |||||||||||||||||||| ||||||| |
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| T |
1154906 |
catcattgccagtaaatatcaaatcatcaacatacaaacttacaatta |
1154953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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