View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20656_high_7 (Length: 413)
Name: NF20656_high_7
Description: NF20656
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20656_high_7 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 380; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 2 - 413
Target Start/End: Complemental strand, 45345187 - 45344776
Alignment:
| Q |
2 |
cttctatcatcaatatctccagcataatcgctgtcactgtaagccaccaattcttcgacatccattctcttataaaacacccctaactccgttgtcccct |
101 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
45345187 |
cttctatcatcaatatctccagcataatcgctgtcagtgtaagccaccaattcttcgtcatccattctcttataaaacacccctaactccgttgtcccct |
45345088 |
T |
|
| Q |
102 |
ttaaataacgaagaaccctctttgctgccagcatatgcaactcagtaggatttgccatatacctgcttaagagacatactacatacattaaatcaggcct |
201 |
Q |
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||| |||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
45345087 |
ttatataacgaagaaccctctttgctgccagcatatgcaacttagtaggattagccatatacctgctcaagagacatactacatacattaaatcaggcct |
45344988 |
T |
|
| Q |
202 |
cgttacagtaacatacatgagactcccaattaattgcttgtaagcagtagcatccaccctaacaccttctccattctttgacagcttaaatccaggaact |
301 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45344987 |
cgttacagtaatgtacatgagactcccaattaattgcttgtaagcagtagcatccaccctaacaccttctccattctttgacagcttaaatccaggaact |
45344888 |
T |
|
| Q |
302 |
ataggattcttaacagagttacaattctgcaatccaaacttttcaagtagctcataagcatatttcttctgacttaagtatatgccgtctgaattttgca |
401 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45344887 |
ataggattcttaacagagttacaattctgcaatccaaacttttcaagtagctcataagcatatttcttctgacttaagtatatgccgtctgaattttgca |
45344788 |
T |
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| Q |
402 |
gaacttctacac |
413 |
Q |
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| T |
45344787 |
gaacttctacac |
45344776 |
T |
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