View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20656_low_1 (Length: 772)

Name: NF20656_low_1
Description: NF20656
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20656_low_1
NF20656_low_1
[»] chr2 (4 HSPs)
chr2 (486-744)||(29907010-29907270)
chr2 (20-134)||(29909799-29909913)
chr2 (338-444)||(33029361-33029467)
chr2 (570-634)||(40021100-40021164)
[»] chr8 (3 HSPs)
chr8 (20-95)||(24268117-24268192)
chr8 (548-652)||(42157205-42157308)
chr8 (41-95)||(12765874-12765929)
[»] chr3 (1 HSPs)
chr3 (41-95)||(13978697-13978751)
[»] chr7 (4 HSPs)
chr7 (20-91)||(4314897-4314968)
chr7 (41-95)||(9735335-9735389)
chr7 (41-95)||(32816547-32816602)
chr7 (42-95)||(28343625-28343678)
[»] chr6 (3 HSPs)
chr6 (40-95)||(2849946-2850001)
chr6 (41-95)||(17514132-17514187)
chr6 (40-94)||(2847180-2847234)
[»] chr4 (5 HSPs)
chr4 (20-95)||(7580108-7580183)
chr4 (20-94)||(5211669-5211743)
chr4 (41-92)||(28257830-28257881)
chr4 (544-617)||(17682218-17682290)
chr4 (26-91)||(34495713-34495778)
[»] scaffold0842 (1 HSPs)
scaffold0842 (20-95)||(3125-3201)
[»] chr5 (3 HSPs)
chr5 (41-95)||(26649036-26649091)
chr5 (41-95)||(26920621-26920676)
chr5 (41-94)||(11221770-11221823)


Alignment Details
Target: chr2 (Bit Score: 138; Significance: 1e-71; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 138; E-Value: 1e-71
Query Start/End: Original strand, 486 - 744
Target Start/End: Original strand, 29907010 - 29907270
Alignment:
Q  486 ctaacaatgtgattaatcttgaaagtttacaaggaacttcaaatataataaaacttaatgttggaatactagttaaaattaagttgaagttagaagagta 585  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| ||||||| ||||||     
T  29907010 ctaacaatgtgattaatcttgaaagtttacaaggaacttcaaatgtaataacacttaatgttggaatactagttaaaattaagtggaagttaaaagagt- 29907108  T
Q  586 aacacaaagttccattggatataactagtgttttgtgaattggaaaaaatgttccacatacgagagg----nnnnnnnnnnnnttaattattaagttttt 681  Q
    |||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||| |||||                |||||||||||| |||     
T  29907109 aacacaaagttccattcgatataactagtgttgtgtgaattggaaaaaatgttccacatacaagaggacacacccacacacacttaattattaag-tttc 29907207  T
Q  682 tccggatttgttacgaactgtcgcctatttcatttcgtacaccaaaaaatattatgatacttc 744  Q
    ||||||||||||||||| ||||||||| ||||||| ||||||| ||||| ||| |||||||||    
T  29907208 tccggatttgttacgaattgtcgcctagttcatttggtacaccgaaaaacattttgatacttc 29907270  T

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Target: chr2; HSP #2
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 20 - 134
Target Start/End: Complemental strand, 29909913 - 29909799
Alignment:
Q  20 tttaagagtgatcttgtgtacctttcaaatatcaaccttttattcctcaaatctttgaggctttgttgaaaaccattatactcacaatttgtttgaatag 119  Q
    ||||||||||| ||||||||||| | |||||||||  ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  29909913 tttaagagtgaccttgtgtacctctaaaatatcaatattttattcctcaaatctttaaggctttgttgaaaaccattatactcacaatttgtttgaatag 29909814  T
Q  120 tgataaatattgttt 134  Q
    |||||||||| ||||    
T  29909813 tgataaatatggttt 29909799  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 338 - 444
Target Start/End: Complemental strand, 33029467 - 33029361
Alignment:
Q  338 tgatgtagagatcttaaccattaatctttaccttatcaatgatcaaaattaatgatagattttcaccattgataatgctcagatcaatggtaaagatctc 437  Q
    |||||| ||||||||||||||| || || ||   ||||||| |||| ||||| | ||||| || |||||||||||||   ||||||||||| || |||||    
T  33029467 tgatgtggagatcttaaccattgattttcacaaaatcaatggtcaagattaagggtagatcttaaccattgataatgtggagatcaatggtcaacatctc 33029368  T
Q  438 tacatta 444  Q
     ||||||    
T  33029367 cacatta 33029361  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 570 - 634
Target Start/End: Original strand, 40021100 - 40021164
Alignment:
Q  570 tgaagttagaagagtaaacacaaagttccattggatataactagtgttt-tgtgaattggaaaaaa 634  Q
    ||||||| ||||||||||||| |||||| |||||||| ||||||| ||| ||||||||| ||||||    
T  40021100 tgaagttggaagagtaaacac-aagttctattggatagaactagtatttgtgtgaattgaaaaaaa 40021164  T

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Target: chr8 (Bit Score: 64; Significance: 1e-27; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 20 - 95
Target Start/End: Complemental strand, 24268192 - 24268117
Alignment:
Q  20 tttaagagtgatcttgtgtacctttcaaatatcaaccttttattcctcaaatctttgaggctttgttgaaaaccat 95  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| ||||||||    
T  24268192 tttaagagtgatcttgtgtacctttcaaatatcaaccttttattcctcgaatctttaaggctttgttcaaaaccat 24268117  T

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Target: chr8; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 548 - 652
Target Start/End: Original strand, 42157205 - 42157308
Alignment:
Q  548 ggaatactagttaaaattaagttgaagttagaagagtaaacacaaagttccattggatataactagtgttttgtgaattggaaaaaatgttccacatacg 647  Q
    |||| ||||||||||| | ||| ||| |||||| |||||||||||||| ||||| |||| |||||| ||| |||||||| |||||||||| ||||||| |    
T  42157205 ggaacactagttaaaactgagtggaaattagaaaagtaaacacaaagtcccattagatagaactagagttatgtgaatt-gaaaaaatgtcccacatagg 42157303  T
Q  648 agagg 652  Q
    |||||    
T  42157304 agagg 42157308  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 95
Target Start/End: Complemental strand, 12765929 - 12765874
Alignment:
Q  41 ctttcaaatatcaaccttttattcctcaaatc-tttgaggctttgttgaaaaccat 95  Q
    ||||||||||| |||| ||||||||||||||| ||| | |||||||||||||||||    
T  12765929 ctttcaaatattaaccctttattcctcaaatcttttaatgctttgttgaaaaccat 12765874  T

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Target: chr3 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 41 - 95
Target Start/End: Original strand, 13978697 - 13978751
Alignment:
Q  41 ctttcaaatatcaaccttttattcctcaaatctttgaggctttgttgaaaaccat 95  Q
    ||||||||||| |||| |||||||||| ||||||| |||||||||||||||||||    
T  13978697 ctttcaaatattaaccctttattcctcgaatctttaaggctttgttgaaaaccat 13978751  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000007; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 20 - 91
Target Start/End: Original strand, 4314897 - 4314968
Alignment:
Q  20 tttaagagtgatcttgtgtacctttcaaatatcaaccttttattcctcaaatctttgaggctttgttgaaaa 91  Q
    |||||||||||| ||||||||||||||| |   |||||||| |||||  ||||||| |||||||||||||||    
T  4314897 tttaagagtgattttgtgtacctttcaacttctaaccttttcttcctagaatctttaaggctttgttgaaaa 4314968  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 41 - 95
Target Start/End: Complemental strand, 9735389 - 9735335
Alignment:
Q  41 ctttcaaatatcaaccttttattcctcaaatctttgaggctttgttgaaaaccat 95  Q
    ||||||||||| |||| |||||||||| ||||||| | |||||||||||||||||    
T  9735389 ctttcaaatattaaccctttattcctcgaatctttaaagctttgttgaaaaccat 9735335  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 95
Target Start/End: Complemental strand, 32816602 - 32816547
Alignment:
Q  41 ctttcaaatatcaaccttttattcctcaaatc-tttgaggctttgttgaaaaccat 95  Q
    ||||||||||| |||| |||||||||| |||| ||| |||||||||||||||||||    
T  32816602 ctttcaaatattaaccatttattcctcgaatcttttaaggctttgttgaaaaccat 32816547  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 95
Target Start/End: Complemental strand, 28343678 - 28343625
Alignment:
Q  42 tttcaaatatcaaccttttattcctcaaatctttgaggctttgttgaaaaccat 95  Q
    |||||||||| |||| |||||| ||| ||||||| || ||||||||||||||||    
T  28343678 tttcaaatattaaccctttatttctcgaatctttaagactttgttgaaaaccat 28343625  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000007; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 40 - 95
Target Start/End: Complemental strand, 2850001 - 2849946
Alignment:
Q  40 cctttcaaatatcaaccttttattcctcaaatctttgaggctttgttgaaaaccat 95  Q
    |||||||||||| |||  |||||||||| ||||||| |||||||||||||||||||    
T  2850001 cctttcaaatattaactctttattcctcgaatctttaaggctttgttgaaaaccat 2849946  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 95
Target Start/End: Original strand, 17514132 - 17514187
Alignment:
Q  41 ctttcaaatatcaaccttttattcctcaaatc-tttgaggctttgttgaaaaccat 95  Q
    ||||||||||| |||| |||||||||| |||| ||| |||||||||||||||||||    
T  17514132 ctttcaaatattaaccctttattcctcgaatcttttaaggctttgttgaaaaccat 17514187  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 40 - 94
Target Start/End: Complemental strand, 2847234 - 2847180
Alignment:
Q  40 cctttcaaatatcaaccttttattcctcaaatctttgaggctttgttgaaaacca 94  Q
    |||||||||||| |||  |||||||||| ||||||| ||||| ||||||||||||    
T  2847234 cctttcaaatattaactctttattcctcgaatctttaaggctctgttgaaaacca 2847180  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000007; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 20 - 95
Target Start/End: Complemental strand, 7580183 - 7580108
Alignment:
Q  20 tttaagagtgatcttgtgtacctttcaaatatcaaccttttattcctcaaatctttgaggctttgttgaaaaccat 95  Q
    ||||||||| |||||||||| ||||||| ||| |||||  |||||||  ||||||| || ||||||||||||||||    
T  7580183 tttaagagtaatcttgtgtagctttcaactattaacctcatattccttgaatctttaagactttgttgaaaaccat 7580108  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 94
Target Start/End: Original strand, 5211669 - 5211743
Alignment:
Q  20 tttaagagtgatcttgtgtacctttcaaatatcaaccttttattcctcaaatctttgaggctttgttgaaaacca 94  Q
    ||||||||| || ||||||||||||||| ||  || ||||| |||||| ||||||| || |||||||||||||||    
T  5211669 tttaagagttatgttgtgtacctttcaactactaatcttttcttcctcgaatctttaagactttgttgaaaacca 5211743  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 92
Target Start/End: Original strand, 28257830 - 28257881
Alignment:
Q  41 ctttcaaatatcaaccttttattcctcaaatctttgaggctttgttgaaaac 92  Q
    ||||||||||| |||| ||||||| || ||||||| ||||||||||||||||    
T  28257830 ctttcaaatattaaccatttattcgtcgaatctttaaggctttgttgaaaac 28257881  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 544 - 617
Target Start/End: Original strand, 17682218 - 17682290
Alignment:
Q  544 tgttggaatactagttaaaattaagttgaagttagaagagtaaacacaaagttccattggatataactagtgtt 617  Q
    ||||||||  |||||| || |||||| |||||| ||||||||||||| |||| | |||||||| ||||||||||    
T  17682218 tgttggaacgctagttgaatttaagtggaagttggaagagtaaacac-aagtcctattggatagaactagtgtt 17682290  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 91
Target Start/End: Original strand, 34495713 - 34495778
Alignment:
Q  26 agtgatcttgtgtacctttcaaatatcaaccttttattcctcaaatctttgaggctttgttgaaaa 91  Q
    |||||||||||||||||||||| ||| |||||| | |||||  ||| |||  ||||||||||||||    
T  34495713 agtgatcttgtgtacctttcaactattaaccttctcttccttgaatttttatggctttgttgaaaa 34495778  T

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Target: scaffold0842 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0842
Description:

Target: scaffold0842; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 20 - 95
Target Start/End: Complemental strand, 3201 - 3125
Alignment:
Q  20 tttaagagtgatcttgtgtaccttt-caaatatcaaccttttattcctcaaatctttgaggctttgttgaaaaccat 95  Q
    ||||| ||||| |||| |||||||| |||  || |||||||| ||||| |||||||| |||||||||||||||||||    
T  3201 tttaaaagtgaacttgggtaccttttcaaccattaaccttttcttccttaaatctttaaggctttgttgaaaaccat 3125  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 95
Target Start/End: Complemental strand, 26649091 - 26649036
Alignment:
Q  41 ctttcaaatatcaaccttttattcctcaaatc-tttgaggctttgttgaaaaccat 95  Q
    ||||||||||| |||| |||||||||| |||| ||| |||||||||||||||||||    
T  26649091 ctttcaaatattaaccctttattcctcgaatcttttaaggctttgttgaaaaccat 26649036  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 95
Target Start/End: Complemental strand, 26920676 - 26920621
Alignment:
Q  41 ctttcaaatatcaaccttttattcctcaaatc-tttgaggctttgttgaaaaccat 95  Q
    ||||||||||| |||| |||||||||| |||| ||| |||||||||||||||||||    
T  26920676 ctttcaaatattaaccctttattcctcgaatcttttaaggctttgttgaaaaccat 26920621  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 94
Target Start/End: Complemental strand, 11221823 - 11221770
Alignment:
Q  41 ctttcaaatatcaaccttttattcctcaaatctttgaggctttgttgaaaacca 94  Q
    ||||||||||| |||| |||||||||| ||||||| || |||| ||||||||||    
T  11221823 ctttcaaatattaaccctttattcctcgaatctttaagactttattgaaaacca 11221770  T

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