View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20656_low_11 (Length: 330)
Name: NF20656_low_11
Description: NF20656
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20656_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 118; Significance: 3e-60; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 201 - 318
Target Start/End: Original strand, 48714908 - 48715025
Alignment:
| Q |
201 |
ataattttctggtacttgcatgtattatatttataggagacaggttttgaagtttcacaacccataattgaagccttgaaaagtaaaggtatttctacta |
300 |
Q |
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| T |
48714908 |
ataattttctggtacttgcatgtattatatttataggagacaggttttgaagtttcacaacccataattgaagccttgaaaagtaaaggtatttctacta |
48715007 |
T |
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| Q |
301 |
ttggagctgctggatttt |
318 |
Q |
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| T |
48715008 |
ttggagctgctggatttt |
48715025 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 19 - 115
Target Start/End: Original strand, 48714805 - 48714901
Alignment:
| Q |
19 |
tattgaaattcagtttttgataactctgatcttaaattatgattaagatgctaaacgccttgtttaatgttattgtgccttctacatttatttataa |
115 |
Q |
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| T |
48714805 |
tattgaaattcaatttttgataactctgatcttaaattatgattaagatgctaaacgccttgtttaatgttattgtgccttccacatttatttataa |
48714901 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 223 - 313
Target Start/End: Original strand, 48702507 - 48702597
Alignment:
| Q |
223 |
tattatatttataggagacaggttttgaagtttcacaacccataattgaagccttgaaaagtaaaggtatttctactattggagctgctgg |
313 |
Q |
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| T |
48702507 |
tattacatttacaggacaaaggttttgaagcttcccaaccaataattgaagccttaaaaagtaaaggtgtttctgctattggagctgctgg |
48702597 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 225 - 318
Target Start/End: Original strand, 48688231 - 48688324
Alignment:
| Q |
225 |
ttatatttataggagacaggttttgaagtttcacaacccataattgaagccttgaaaagtaaaggtatttctactattggagctgctggatttt |
318 |
Q |
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| T |
48688231 |
ttatattaataggacaaaggttttgaagatgcaaaacccataattgaagccataaaaagtaaaggtgtttcatctgtcggggctgctggatttt |
48688324 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 261 - 304
Target Start/End: Complemental strand, 32150450 - 32150407
Alignment:
| Q |
261 |
cccataattgaagccttgaaaagtaaaggtatttctactattgg |
304 |
Q |
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| T |
32150450 |
cccataattgaagccttaaaaagtaaaggtgtttctgctattgg |
32150407 |
T |
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