View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20656_low_13 (Length: 314)
Name: NF20656_low_13
Description: NF20656
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20656_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 186; Significance: 1e-101; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 19 - 300
Target Start/End: Original strand, 12596169 - 12596450
Alignment:
| Q |
19 |
ttgaaagcgcatgagtcccttaagctcttcagttggcatgcttttagggaggcaaggccaacaaaagacttcgctattctctcaaaagatgtagttgcct |
118 |
Q |
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||||| |||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||| |||||||||| |||||||||||||| |
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| T |
12596169 |
ttgaatgcgcatgagtcccttaagctcttcagttttcatgcttttagggaggcaaggtcaacaaaagacttcgcaattctctcaagagatgtagttgcct |
12596268 |
T |
|
| Q |
119 |
actgtggtggactaccactggctcttgaagtccttgggtcttacttgttcaagaggagaaaacaagagtggcagagtgtattgttaaagctnnnnnnnnt |
218 |
Q |
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|||| | |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| | |
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| T |
12596269 |
actgcgatggactaccactagctcttgaagtccttgggtcttacttgttcaagaggagaaaacaagagtggcagagtgtattatcaaagctaaaaaagat |
12596368 |
T |
|
| Q |
219 |
acccaataatcaaatacatgagatactaaaaataagtttcgatggtttaagggatcgtatggaaaaggatatatttcttgat |
300 |
Q |
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| T |
12596369 |
actcaatgatgaaatacacaagaaactaaaaataagtttcgaaggtttaagggatcgtatggaaaaggatatatttcttgat |
12596450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 105 - 300
Target Start/End: Original strand, 15801507 - 15801702
Alignment:
| Q |
105 |
agatgtagttgcctactgtggtggactaccactggctcttgaagtccttgggtcttacttgttcaagaggagaaaacaagagtggcagagtgtattgtta |
204 |
Q |
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|||||||||| |||| ||||||||||||||||| ||||||||||||||||| |||||||| ||||| |||||||||| |||||||||||||||| | | |
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| T |
15801507 |
agatgtagtttcctattgtggtggactaccactagctcttgaagtccttggatcttacttattcaataggagaaaacgagagtggcagagtgtaatatcc |
15801606 |
T |
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| Q |
205 |
aagctnnnnnnnntacccaataatcaaatacatgagatactaaaaataagtttcgatggtttaagggatcgtatggaaaaggatatatttcttgat |
300 |
Q |
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| T |
15801607 |
aagctacaaaagatacccaatgatcaaatacacgagaaactaaaaataagctttgatggtttagaggatcatatggaaaagaatatatttcttgat |
15801702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 132; Significance: 1e-68; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 30 - 305
Target Start/End: Original strand, 3313298 - 3313573
Alignment:
| Q |
30 |
tgagtcccttaagctcttcagttggcatgcttttagggaggcaaggccaacaaaagacttcgctattctctcaaaagatgtagttgcctactgtggtgga |
129 |
Q |
| |
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|||||||||| |||| |||||| |||||| ||||||||| |||| |||| | ||| ||| |||||| |||| | ||||||||||||| ||||||||| |
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| T |
3313298 |
tgagtcccttgagcttttcagtcagcatgcgtttagggagacaagtccaatagaaggtttccttattctttcaagatatgtagttgcctattgtggtgga |
3313397 |
T |
|
| Q |
130 |
ctaccactggctcttgaagtccttgggtcttacttgttcaagaggagaaaacaagagtggcagagtgtattgttaaagctnnnnnnnntacccaataatc |
229 |
Q |
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|| ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| | |||||| |||| ||| ||| |
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| T |
3313398 |
ctgccactagctcttgaagtccttggatcttacttgttcaagaggagaaaacaagagtggcagagtgtattatcaaagctagaaaagatacctaatgatc |
3313497 |
T |
|
| Q |
230 |
aaatacatgagatactaaaaataagtttcgatggtttaagggatcgtatggaaaaggatatatttcttgatctgtg |
305 |
Q |
| |
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|||||||||||| |||||||||||| || || ||||||||||||| ||||||||||||||||||||||||| |||| |
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| T |
3313498 |
aaatacatgagaaactaaaaataagctttgacggtttaagggatcatatggaaaaggatatatttcttgatgtgtg |
3313573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 30 - 300
Target Start/End: Original strand, 3362668 - 3362938
Alignment:
| Q |
30 |
tgagtcccttaagctcttcagttggcatgcttttagggaggcaaggccaacaaaagacttcgctattctctcaaaagatgtagttgcctactgtggtgga |
129 |
Q |
| |
|
|||||||||| |||| ||| || ||||||||| || |||| | |||||| |||||||| ||||||||||| ||||||||||||||| ||||||||| |
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| T |
3362668 |
tgagtcccttgagcttttctgtaaacatgcttttcggaaggcgattccaacacaagacttccttattctctcaagagatgtagttgcctattgtggtgga |
3362767 |
T |
|
| Q |
130 |
ctaccactggctcttgaagtccttgggtcttacttgttcaagaggagaaaacaagagtggcagagtgtattgttaaagctnnnnnnnntacccaataatc |
229 |
Q |
| |
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||||||| ||||||||||||||||| ||||||||||||||||||| |||||||||||||| ||||||||| | |||||| |||||||| ||| |
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| T |
3362768 |
ataccactagctcttgaagtccttggatcttacttgttcaagaggaaaaaacaagagtggcggagtgtattatcaaagctagaaaagatacccaatgatc |
3362867 |
T |
|
| Q |
230 |
aaatacatgagatactaaaaataagtttcgatggtttaagggatcgtatggaaaaggatatatttcttgat |
300 |
Q |
| |
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||||||| ||||||||||||||||| || |||||||||| |||||||||||||||| |||||||||||||| |
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| T |
3362868 |
aaatacacgagatactaaaaataagctttgatggtttaaaggatcgtatggaaaagaatatatttcttgat |
3362938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 31 - 300
Target Start/End: Complemental strand, 3393214 - 3392945
Alignment:
| Q |
31 |
gagtcccttaagctcttcagttggcatgcttttagggaggcaaggccaacaaaagacttcgctattctctcaaaagatgtagttgcctactgtggtggac |
130 |
Q |
| |
|
||||||||| |||| ||| || | |||||||||||| ||| || |||||| |||||||| ||||||||||| | ||||||||||||| ||||||||| |
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| T |
3393214 |
gagtcccttgagcttttctgtggacatgcttttaggaaggtaattccaacagaagacttccttattctctcaagatatgtagttgcctattgtggtggaa |
3393115 |
T |
|
| Q |
131 |
taccactggctcttgaagtccttgggtcttacttgttcaagaggagaaaacaagagtggcagagtgtattgttaaagctnnnnnnnntacccaataatca |
230 |
Q |
| |
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||||||| ||||||||||||||||| |||||||| || |||||||||||||||||||||||||||||||| | |||||| |||||||| |||| |
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| T |
3393114 |
taccactagctcttgaagtccttggatcttacttattgaagaggagaaaacaagagtggcagagtgtattatcaaagcttgaaaaaatacccaatgatca |
3393015 |
T |
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| Q |
231 |
aatacatgagatactaaaaataagtttcgatggtttaagggatcgtatggaaaaggatatatttcttgat |
300 |
Q |
| |
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||||||||||| ||||||||| || || |||||||||| |||||||||||||||||||||||||||||| |
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| T |
3393014 |
aatacatgagaaactaaaaattagctttaatggtttaagcgatcgtatggaaaaggatatatttcttgat |
3392945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 249 - 299
Target Start/End: Complemental strand, 3263938 - 3263888
Alignment:
| Q |
249 |
aataagtttcgatggtttaagggatcgtatggaaaaggatatatttcttga |
299 |
Q |
| |
|
|||||||| ||||||||||| |||| ||||||||||||||||||||||||| |
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| T |
3263938 |
aataagttacgatggtttaaaggatggtatggaaaaggatatatttcttga |
3263888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 109 - 198
Target Start/End: Complemental strand, 7166217 - 7166128
Alignment:
| Q |
109 |
gtagttgcctactgtggtggactaccactggctcttgaagtccttgggtcttacttgttcaagaggagaaaacaagagtggcagagtgta |
198 |
Q |
| |
|
||||||||||| ||||| ||| |||||||||||||||||||| | || |||||||| | | ||||| ||||||||| ||| | |||||| |
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| T |
7166217 |
gtagttgcctattgtggaggattaccactggctcttgaagtcatcggttcttacttatacgggaggacaaaacaagaatgggaaagtgta |
7166128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 131 - 185
Target Start/End: Complemental strand, 3408848 - 3408794
Alignment:
| Q |
131 |
taccactggctcttgaagtccttgggtcttacttgttcaagaggagaaaacaaga |
185 |
Q |
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||||||||||||||||||||||||| || ||||| || |||||| ||||||||| |
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| T |
3408848 |
taccactggctcttgaagtccttggatcctacttatttgagaggacaaaacaaga |
3408794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 29 - 164
Target Start/End: Complemental strand, 32412593 - 32412458
Alignment:
| Q |
29 |
atgagtcccttaagctcttcagttggcatgcttttagggaggcaaggccaacaaaagacttcgctattctctcaaaagatgtagttgcctactgtggtgg |
128 |
Q |
| |
|
||||||||||| | || |||||||||||||||||||| || |||| ||||||||| |||| || ||||| | | |||| ||||| |||||||| || |
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| T |
32412593 |
atgagtcccttgaacttttcagttggcatgcttttagagaaccaagtccaacaaaatactttactgaactctctagaaatgttgttgcttactgtggagg |
32412494 |
T |
|
| Q |
129 |
actaccactggctcttgaagtccttgggtcttactt |
164 |
Q |
| |
|
| | ||||| ||||||||| ||||||| |||||||| |
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|
| T |
32412493 |
attgccacttgctcttgaaatccttggatcttactt |
32412458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 29 - 164
Target Start/End: Complemental strand, 6907480 - 6907345
Alignment:
| Q |
29 |
atgagtcccttaagctcttcagttggcatgcttttagggaggcaaggccaacaaaagacttcgctattctctcaaaagatgtagttgcctactgtggtgg |
128 |
Q |
| |
|
||||||||||| |||| |||||||||||||||||||| | |||| |||| | | ||||| | |||||||||| |||||||| |||||||| || |
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| T |
6907480 |
atgagtcccttgagcttttcagttggcatgcttttagaaacgcaactccaagagcaaacttcagtgatctctcaaaaaatgtagttaattactgtggagg |
6907381 |
T |
|
| Q |
129 |
actaccactggctcttgaagtccttgggtcttactt |
164 |
Q |
| |
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| |||| ||||| |||||||||| || |||||||| |
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| T |
6907380 |
attacccttggctgttgaagtcctcggatcttactt |
6907345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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