View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20656_low_15 (Length: 294)
Name: NF20656_low_15
Description: NF20656
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20656_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 167; Significance: 2e-89; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 16 - 275
Target Start/End: Original strand, 40491914 - 40492173
Alignment:
| Q |
16 |
atattaatcaaacaaacccttgaggagaaaagggaattgttgaggaaaa-gaacttacaaacccccagcgctaaggcataactggggctgagccaaagaa |
114 |
Q |
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| T |
40491914 |
atattaatcaaacaaacccttgag---aaaagggaattgttgaggaaaaagaacttacaaacccccagcgctaaggcataacaggggctgagccaaagaa |
40492010 |
T |
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| Q |
115 |
cnnnnnnnnncccacacaaaagacaaacaacgcaaggcagggagcaggaaagaaaaaaccgtaaccagcatnnnnnnnn--cagcagcaaatacaagcac |
212 |
Q |
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| T |
40492011 |
caaaaaaaaacccacacaaaacacaaacaacgcaaggcagggagcaggaaagaaaaaaccgtaaccagcataaaaaaaaaacagcagcaaatacaagcac |
40492110 |
T |
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| Q |
213 |
cactgaaacctaaggctaccgaaacatccaaaccaaaagccaccagcctgcgcacctcccaca |
275 |
Q |
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| T |
40492111 |
cactgaaacctaaggcaaccgaaacatccaaaccaaaagccaccagcctgcgcacctcccaca |
40492173 |
T |
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