View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20656_low_16 (Length: 284)
Name: NF20656_low_16
Description: NF20656
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20656_low_16 |
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Alignment Details
Target: chr7 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 273
Target Start/End: Complemental strand, 44937011 - 44936739
Alignment:
| Q |
1 |
atttctacatgcttttaggagtagtttatagccacgtttgcaacctttagttgcactgaaattaccaacttgatttagtgcatatgccgacatgcattgt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44937011 |
atttctacatgcttttaggagtagtttatagccacgtttgcaacctttagttgcacagaaattaccaacttgatttagtgcatatgccgacatgcattgt |
44936912 |
T |
|
| Q |
101 |
gaacacttaaatagtacgtgtcaatatggactgcgatcaaatttattttacggataccatcaatannnnnnnnnaagggttccatcagtattattaatcg |
200 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
44936911 |
gaacacttaaatagtacgtgtcaatatgaactgcgatcaaatttattttacggataccatcaatatttttttttaagggttccatcagtattattaatcg |
44936812 |
T |
|
| Q |
201 |
ttagcacagtgcacatttgatcctccattataaggatcaacaaaccactaaaaataacgtgtccatgatgatg |
273 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
44936811 |
ttagcacagtgcacatttgatcctccattataaggatcaacaaaccactaaaaaaaacgtgtccatgatgatg |
44936739 |
T |
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