View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20656_low_17 (Length: 270)
Name: NF20656_low_17
Description: NF20656
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20656_low_17 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 249; Significance: 1e-138; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 10 - 270
Target Start/End: Complemental strand, 49059098 - 49058838
Alignment:
| Q |
10 |
attattctcaaaacacaggatagaatagataaaatgcagttttgtcaagtaaactccaatggacccttcatggattttgatgaatgtggtatgtcaagaa |
109 |
Q |
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| T |
49059098 |
attaatctcaaaacacaggatagaatagataaaatgcagttttgtcaagtaaactccaatggacccttcatggattttgatgaatgtggtatgtcaagaa |
49058999 |
T |
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| Q |
110 |
gtgcaatttattagtaaatgtaataaatgggcaggttcctcgagcggacgaagccctatgtggtaccgttcagggataatcttgtaaattggaccgtagt |
209 |
Q |
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| T |
49058998 |
gtgcaatttattagtaaatgtaataagtgggcaggttcctcgagtggacgaagccctatgtggtaccgttcagggataatcttgtaaattggaccgtagt |
49058899 |
T |
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| Q |
210 |
attaaacacaagtcgtactatgtacaccctaagcttgattaattaataaaaaattactgta |
270 |
Q |
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| T |
49058898 |
attaaacacaagtcgtactatgtacaccctaagcttgattaattaataaaaaattactgta |
49058838 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 15 - 106
Target Start/End: Original strand, 6553616 - 6553707
Alignment:
| Q |
15 |
tctcaaaacacaggatagaatagataaaatgcagttttgtcaagtaaactccaatggacccttcatggattttgatgaatgtggtatgtcaa |
106 |
Q |
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| T |
6553616 |
tctccaaacaccggaaagaatagataacatgcagttttgtcaagttaactccaatggacccttcatagattttgataaatgtggtaagtcaa |
6553707 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 181 - 252
Target Start/End: Complemental strand, 34372540 - 34372468
Alignment:
| Q |
181 |
agggataatcttgtaaattggaccgtagta-ttaaacacaagtcgtactatgtacaccctaagcttgattaat |
252 |
Q |
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| T |
34372540 |
agggataatcttgtaaactggatcgtagtatttaaatacaagttgtactttgtaaaccctaagcttgaataat |
34372468 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 186 - 252
Target Start/End: Original strand, 38779442 - 38779509
Alignment:
| Q |
186 |
taatcttgtaaattggaccgtagtatt-aaacacaagtcgtactatgtacaccctaagcttgattaat |
252 |
Q |
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| T |
38779442 |
taatcttgtaaactggactgtagtatttaaacacaagttgtactatgcaaaccctaagcttgagtaat |
38779509 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 179 - 222
Target Start/End: Complemental strand, 38752678 - 38752634
Alignment:
| Q |
179 |
tcagggataatcttgtaaattggaccgtagta-ttaaacacaagt |
222 |
Q |
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| T |
38752678 |
tcagagataatcttgtaaattggactgtagtatttaaacacaagt |
38752634 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 186 - 252
Target Start/End: Original strand, 48883769 - 48883836
Alignment:
| Q |
186 |
taatcttgtaaattggaccgtagtattaaac-acaagtcgtactatgtacaccctaagcttgattaat |
252 |
Q |
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| T |
48883769 |
taatcttttaaattggactgtagtattaaaataccagttgtactctgtacaccctaagcttgattaat |
48883836 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 247
Target Start/End: Complemental strand, 37410071 - 37410009
Alignment:
| Q |
186 |
taatcttgtaaattggaccgtagta-ttaaacacaagtcgtactatgtacaccctaagcttga |
247 |
Q |
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| T |
37410071 |
taatcttgtaaattggaccgtagtatttaaaaacaaattgtaatatgtaaactctaagcttga |
37410009 |
T |
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