View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20656_low_18 (Length: 268)
Name: NF20656_low_18
Description: NF20656
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20656_low_18 |
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Alignment Details
Target: chr6 (Bit Score: 200; Significance: 1e-109; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 258
Target Start/End: Complemental strand, 17434711 - 17434457
Alignment:
| Q |
1 |
ttttatcatgatattgattttccaaaaggtcatgtagcaatcaagagttttgatgctgaagttgttgatgaagccggaaattctataccgttgcacgaaa |
100 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || ||||| |||||||||||||||| |
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| T |
17434711 |
ttttattatgatattgattttccaaaaggtcatgtagcaatcaagagttttgatgcagaagttgttgatgaagctgggaattcgataccgttgcacgaaa |
17434612 |
T |
|
| Q |
101 |
catatctccaccattgggttgttgcaagatatcatcaaagaaaacatgtcacatacatagaaaatgatagccataggatgcttcaaaactctgattatgt |
200 |
Q |
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| ||||| || ||||||||||||||||||||||||| |||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
17434611 |
cttatcttcatcattgggttgttgcaagatatcatctaaga---catgtcacatacacagaaaatgatagccataggatgcttcaaaactctgattatgt |
17434515 |
T |
|
| Q |
201 |
tcttgtaaggaacaatggcatatgccaggcagatattcttccccagtatttcggcctt |
258 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
17434514 |
tcttgtaaggaacaatggcatatgccaggcagatattcttccacagtatttcggcctt |
17434457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 1 - 258
Target Start/End: Complemental strand, 17455814 - 17455557
Alignment:
| Q |
1 |
ttttatcatgatattgattttccaaaaggtcatgtagcaatcaagagttttgatgctgaagttgttgatgaagccggaaattctataccgttgcacgaaa |
100 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||||||||||||| |
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| T |
17455814 |
ttttatgatgatattgattttccaaaaggtcatgtagcaatcaagagttttgatgctgaagttgttgatgaagctgggaattcgataccgttgcacgaaa |
17455715 |
T |
|
| Q |
101 |
catatctccaccattgggttgttgcaagatatcatcaaagaaaacatgtcacatacatagaaaatgatagccataggatgcttcaaaactctgattatgt |
200 |
Q |
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| T |
17455714 |
cttatctccatcattgggttgttggaagatatcatcaaagtaatcatgccacacacacagaaaatgatagtcacaagatgcttcaaaaagcttatccagg |
17455615 |
T |
|
| Q |
201 |
tcttgtaaggaacaatggcatatgccaggcagatattcttccccagtatttcggcctt |
258 |
Q |
| |
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||| || ||||||| |||||| ||||| | | |||||||||| ||||||||||||||| |
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| T |
17455614 |
tctcgtgaggaacagtggcatttgccaaggaaatattcttccacagtatttcggcctt |
17455557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 101
Target Start/End: Complemental strand, 34212369 - 34212279
Alignment:
| Q |
11 |
atattgattttccaaaaggtcatgtagcaatcaagagttttgatgctgaagttgttgatgaagccggaaattctataccgttgcacgaaac |
101 |
Q |
| |
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||||||| |||||||| |||||||| | ||||||||||||||||| ||| | ||||||||| ||||| ||| |||| ||||| ||||| |
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| T |
34212369 |
atattgaatttccaaagggtcatgttggaatcaagagttttgatgttgatctagttgatgaacatggaaactctgtaccattgcatgaaac |
34212279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 111; Significance: 4e-56; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 3 - 229
Target Start/End: Complemental strand, 38254312 - 38254086
Alignment:
| Q |
3 |
ttatcatgatattgattttccaaaaggtcatgtagcaatcaagagttttgatgctgaagttgttgatgaagccggaaattctataccgttgcacgaaaca |
102 |
Q |
| |
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|||| |||||||||||||||||| ||| ||| ||||||||||| ||| |||||||||| ||||||||| | |||||| ||||||| | || ||||| |
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| T |
38254312 |
ttattatgatattgattttccaagaggccatatagcaatcaaggatttccatgctgaagtagttgatgaatctggaaatcctatacctctccatgaaact |
38254213 |
T |
|
| Q |
103 |
tatctccaccattgggttgttgcaagatatcatcaaagaaaacatgtcacatacatagaaaatgatagccataggatgcttcaaaactctgattatgttc |
202 |
Q |
| |
|
|||||||| ||||||||||||| |||||||||||||||||||||||| ||| ||| ||||||||||||||| | |||||| |||||||||||| |||||| |
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| T |
38254212 |
tatctccatcattgggttgttggaagatatcatcaaagaaaacatgttacacacacagaaaatgatagccacatgatgctacaaaactctgatcatgttc |
38254113 |
T |
|
| Q |
203 |
ttgtaaggaacaatggcatatgccagg |
229 |
Q |
| |
|
|||| || |||| |||||||||||||| |
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|
| T |
38254112 |
ttgtgagaaacagtggcatatgccagg |
38254086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 3 - 224
Target Start/End: Complemental strand, 38215162 - 38214938
Alignment:
| Q |
3 |
ttatcatgatattgattttccaaaaggtcatgtagcaatcaagagttttgatgctgaagttgttgatgaagccggaaattctataccgttgcacgaaaca |
102 |
Q |
| |
|
|||| |||||||||||||||||| ||||||||||||| |||||||||| ||||||||||||||||||||| || ||| ||||||| | || ||||| |
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| T |
38215162 |
ttattatgatattgattttccaagaggtcatgtagcactcaagagtttcaatgctgaagttgttgatgaagatggtaatcctatacccctccatgaaact |
38215063 |
T |
|
| Q |
103 |
tatctccaccattgggttgttgcaagatatcatcaaagaaaacatgtcacatacatagaaaatgatagccataggatgcttcaaaact---ctgattatg |
199 |
Q |
| |
|
||||| || ||||||| ||||| |||||||||||||||||||||||| ||| ||| ||||||||||||||| |||||||||||||||| ||||| ||| |
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| T |
38215062 |
tatcttcatcattgggctgttggaagatatcatcaaagaaaacatgttacacacacagaaaatgatagccacaggatgcttcaaaactctgctgatcatg |
38214963 |
T |
|
| Q |
200 |
ttcttgtaaggaacaatggcatatg |
224 |
Q |
| |
|
||||||| || |||| ||||||||| |
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| T |
38214962 |
ttcttgtgagaaacagtggcatatg |
38214938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 3 - 229
Target Start/End: Complemental strand, 38227582 - 38227356
Alignment:
| Q |
3 |
ttatcatgatattgattttccaaaaggtcatgtagcaatcaagagttttgatgctgaagttgttgatgaagccggaaattctataccgttgcacgaaaca |
102 |
Q |
| |
|
|||| |||||||||||||||||| ||| ||| ||||| | |||||||| |||||||||| |||||||| || || ||| ||||||| | || ||||| |
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| T |
38227582 |
ttattatgatattgattttccaagagggcatatagcactaaagagtttcaatgctgaagtagttgatgatgctggtaatcctatacctctccatgaaacc |
38227483 |
T |
|
| Q |
103 |
tatctccaccattgggttgttgcaagatatcatcaaagaaaacatgtcacatacatagaaaatgatagccataggatgcttcaaaactctgattatgttc |
202 |
Q |
| |
|
|||||||| |||||| ||||| |||| || ||||||||||| |||||||| ||| |||| ||| |||||| | ||||||||||||||||||| |||||| |
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| T |
38227482 |
tatctccatcattggcttgttcaaagacattatcaaagaaaatatgtcacacacacagaagatgttagccacatgatgcttcaaaactctgatcatgttc |
38227383 |
T |
|
| Q |
203 |
ttgtaaggaacaatggcatatgccagg |
229 |
Q |
| |
|
|||||||||||| |||||||||||||| |
|
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| T |
38227382 |
ttgtaaggaacagtggcatatgccagg |
38227356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 38249199 - 38248971
Alignment:
| Q |
1 |
ttttatcatgatattgattttccaaaaggtcatgtagcaatcaagagttttgatgctgaagttgttgatgaagccggaaattctataccgttgcacgaaa |
100 |
Q |
| |
|
|||||| || ||||||||||||||| | |||| ||||| |||||||||| ||||||||||||||||||||| || ||| ||||||| | || |||| |
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|
| T |
38249199 |
ttttattattatattgattttccaagtgatcatatagcactcaagagtttcaatgctgaagttgttgatgaagatggtaatcctatacccctccatgaaa |
38249100 |
T |
|
| Q |
101 |
catatctccaccattgggttgttgcaagatatcatcaaagaaaacatgtcacatacatagaaaatgatagccataggatgcttcaaaactctgattatgt |
200 |
Q |
| |
|
| |||||||| |||||| |||||| | || || ||||||||||| |||||||| ||| |||| ||| |||||| | |||||||||||||| |||| |||| |
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|
| T |
38249099 |
cctatctccatcattggcttgttgaatgacattatcaaagaaaatatgtcacacacacagaagatggtagccacatgatgcttcaaaactatgatcatgt |
38249000 |
T |
|
| Q |
201 |
tcttgtaaggaacaatggcatatgccagg |
229 |
Q |
| |
|
|||||||||||||| |||||||||||||| |
|
|
| T |
38248999 |
tcttgtaaggaacagtggcatatgccagg |
38248971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 3 - 229
Target Start/End: Complemental strand, 38221201 - 38220975
Alignment:
| Q |
3 |
ttatcatgatattgattttccaaaaggtcatgtagcaatcaagagttttgatgctgaagttgttgatgaagccggaaattctataccgttgcacgaaaca |
102 |
Q |
| |
|
|||| |||||||||||||||||| |||||||||||||||||||||||| |||||||||| |||||||||| || ||| ||||||| | || ||||| |
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|
| T |
38221201 |
ttattatgatattgattttccaagaggtcatgtagcaatcaagagtttccatgctgaagtagttgatgaagatggtaatcctatacccctccatgaaact |
38221102 |
T |
|
| Q |
103 |
tatctccaccattgggttgttgcaagatatcatcaaagaaaacatgtcacatacatagaaaatgatagccataggatgcttcaaaactctgattatgttc |
202 |
Q |
| |
|
||||| || ||||||||||||| ||||||||||||||| |||||||||||| ||| | ||||||| |||| | ||||| | |||| |||||| || || |
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|
| T |
38221101 |
tatcttcatcattgggttgttgaaagatatcatcaaagtaaacatgtcacacacacaagaaatgatggccaaaagatgcctgaaaattctgataatatta |
38221002 |
T |
|
| Q |
203 |
ttgtaaggaacaatggcatatgccagg |
229 |
Q |
| |
|
| |||||||||| ||| |||||||||| |
|
|
| T |
38221001 |
tggtaaggaacagtggtatatgccagg |
38220975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 8 - 187
Target Start/End: Complemental strand, 38244044 - 38243865
Alignment:
| Q |
8 |
atgatattgattttccaaaaggtcatgtagcaatcaagagttttgatgctgaagttgttgatgaagccggaaattctataccgttgcacgaaacatatct |
107 |
Q |
| |
|
|||||||||||||||||| ||||||| | ||| |||||||||| |||||||||| |||||||||| || ||| ||||||| | || ||||| ||||| |
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|
| T |
38244044 |
atgatattgattttccaagaggtcatattgcactcaagagtttcaatgctgaagtagttgatgaagttggtaatcctatacctctccatgaaacttatct |
38243945 |
T |
|
| Q |
108 |
ccaccattgggttgttgcaagatatcatcaaagaaaacatgtcacatacatagaaaatgatagccataggatgcttcaaa |
187 |
Q |
| |
|
||| ||||||| ||||| ||||||||||||||| |||||||||||| ||| | ||||||| || | ||||||||||||| |
|
|
| T |
38243944 |
ccatcattggggtgttggaagatatcatcaaagtaaacatgtcacacacacaagaaatgatggcaaaaggatgcttcaaa |
38243865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 3 - 148
Target Start/End: Complemental strand, 38239081 - 38238936
Alignment:
| Q |
3 |
ttatcatgatattgattttccaaaaggtcatgtagcaatcaagagttttgatgctgaagttgttgatgaagccggaaattctataccgttgcacgaaaca |
102 |
Q |
| |
|
|||| ||||||||| |||||||| ||||||||||||| |||||||||| |||||||||| ||||| ||| | || ||| || |||| | || ||||| |
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|
| T |
38239081 |
ttattatgatattggttttccaagaggtcatgtagcactcaagagtttcaatgctgaagtagttgacgaatcagggaatcctgtacctctccatgaaact |
38238982 |
T |
|
| Q |
103 |
tatctccaccattgggttgttgcaagatatcatcaaagaaaacatg |
148 |
Q |
| |
|
|||||||| |||||| |||||| ||||||||||||||| ||||||| |
|
|
| T |
38238981 |
tatctccatcattggcttgttgtaagatatcatcaaagtaaacatg |
38238936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 11 - 206
Target Start/End: Original strand, 15912993 - 15913188
Alignment:
| Q |
11 |
atattgattttccaaaaggtcatgtagcaatcaagagttttgatgctgaagttgttgatgaagccggaaattctataccgttgcacgaaacatatctcca |
110 |
Q |
| |
|
||||||||||||||| |||||| ||||| |||||||||| | | || || | |||||||| || ||| ||||||| | || ||||| ||| |||| |
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|
| T |
15912993 |
atattgattttccaagaggtcacatagcactcaagagtttcaacgacgaggtagctgatgaagttggtaatcctatacctctccatgaaacctatttcca |
15913092 |
T |
|
| Q |
111 |
ccattgggttgttgcaagatatcatcaaagaaaacatgtcacatacatagaaaatgatagccataggatgcttcaaaactctgattatgttcttgt |
206 |
Q |
| |
|
||||||| ||||| || ||| || ||||| ||||| | |||| ||| ||||||||||||||| | ||||||||||| || |||| |||||||||| |
|
|
| T |
15913093 |
tcattgggctgttgtaaaataacaacaaagcaaacacgccacacacacagaaaatgatagccacatgatgcttcaaagctttgatcatgttcttgt |
15913188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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