View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20656_low_19 (Length: 251)
Name: NF20656_low_19
Description: NF20656
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20656_low_19 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 5 - 251
Target Start/End: Complemental strand, 45344401 - 45344155
Alignment:
| Q |
5 |
tggtacacactccaccccttttgtgctgctaaagctaaaaccatccggattgtgtcccaccttgctaccggagcaaagacttcgtcataatcaacccttg |
104 |
Q |
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| T |
45344401 |
tggtacacactccaccccttttgtgctgctaaagctaaaaccatccggattgtgtcccaccttgctaccggagcaaagacttcgttataatcaacccttg |
45344302 |
T |
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| Q |
105 |
ttgctgagcatagcctttagctaccaaccgggctttgaacttatcaacctcgccattctcatttaatttggttctaaagacccatttcacaccaatcttc |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45344301 |
ttgctgagcatagcctttagctaccaaccgggctttgaacttatcaacctcgccattctcatttaatttggttctaaagacccatttcacaccaatcttc |
45344202 |
T |
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| Q |
205 |
ttagcaccttcaggtaaatttgtaagctgccaagttttattcttttc |
251 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45344201 |
ttagcaccttcaggtaaatttgtaagctgccaagttttattcttttc |
45344155 |
T |
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