View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20656_low_6 (Length: 415)
Name: NF20656_low_6
Description: NF20656
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20656_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 365; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 12 - 396
Target Start/End: Complemental strand, 31464113 - 31463729
Alignment:
| Q |
12 |
acagatgacattggtggtctaagagttggagatggattggtgcaaaggagtgccagttgcagcattctcatggcctcttctgaggagtattttgaaccaa |
111 |
Q |
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| T |
31464113 |
acagatgacattggtggtctaagagttggagatggattagtgcaaaggagtgccaattgcagcattctcatggcctcttctgaggagtattttgaaccaa |
31464014 |
T |
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| Q |
112 |
gagttgggtccaccaattccagaaggtttccttgttcttggagaacataggccttttttaatgacgtacataatatagtattagaaaaaatttaaccata |
211 |
Q |
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| T |
31464013 |
gagttgggtccaccaattccagaaggtttccttgttcttggagaacataggccttttttaatgacatacaaaatatagtattagaaaaaatttaaccata |
31463914 |
T |
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| Q |
212 |
ccataattgtaaaacaagggaaatcacaaatgaaaaaacctgaccaagtatactattattaatgtcaccttttgtttaatgtatataataaaccttaatt |
311 |
Q |
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| T |
31463913 |
ccataattgtaaaacaagggaaatcacaaatgaaaaaacctgaccaagtatactattattaatgtcacctttggtttaatgtatataataaaccttaatt |
31463814 |
T |
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| Q |
312 |
cttaacttattatatttgattttgaaatgatttattgtttttggagagaaatagaatgaagattccgatataaatgaaaacacca |
396 |
Q |
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| T |
31463813 |
cttaacttattatatttgattttgaaatgatttattgtttttggagagaaatagaatgaagattccgatataaatgaaaacacca |
31463729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 103 - 166
Target Start/End: Complemental strand, 20063103 - 20063040
Alignment:
| Q |
103 |
ttgaaccaagagttgggtccaccaattccagaaggtttccttgttcttggagaacataggcctt |
166 |
Q |
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| T |
20063103 |
ttgaaccaagacttggatccaccaactccaggaggtttccttgatctttgagatcataggcctt |
20063040 |
T |
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