View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20656_low_9 (Length: 354)
Name: NF20656_low_9
Description: NF20656
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20656_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 297; Significance: 1e-167; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 1 - 337
Target Start/End: Complemental strand, 48714557 - 48714221
Alignment:
| Q |
1 |
aggtagacaggccaaaaagtcaaaatctatttacttcaaatttaattttgacgaagttcattatttacttttgcttatattcaagactagagggagcgct |
100 |
Q |
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| T |
48714557 |
aggtagacaggccaaaaagtcaaaatctatttacttcaaatttaattttgacgaagttcattatttacttttgcttatattcaagaccaaaggaagcgct |
48714458 |
T |
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| Q |
101 |
taatatcagcatttcatattgaaaaacgtgagaatttgtaatcatcatcataccttaaaattggggctttatatcctacaaaacaaattaagcatgtgaa |
200 |
Q |
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| T |
48714457 |
tagtatcaacatttcatattgaaaaacgtgagaattgataattatcatcataccttaaaattggggctttatatcctacaaaacaaattaagcatgtgaa |
48714358 |
T |
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| Q |
201 |
gacaaaaactgttaaacatgtgtagatgcattcaatatatgaaaccatgacctcctcaaaataatcagtcatagataagaaggaaaggcaatagaacagt |
300 |
Q |
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| T |
48714357 |
gacaaaaactgttaaacatgtgtagatgcattcaatatatgaaaccatgacctcctcaaaataatcagccatagataagaaggaaaggcaatagaacagt |
48714258 |
T |
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| Q |
301 |
accaaaaacgtcggagacgaggagaatgacgaaggtg |
337 |
Q |
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| T |
48714257 |
accaaaaatgtcggagacgaggagaatgacgaaggtg |
48714221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 67 - 201
Target Start/End: Complemental strand, 47165824 - 47165691
Alignment:
| Q |
67 |
acttttgcttatattcaagactagagggagcgcttaatatcagcatttcatattgaaaaacgtgagaatttgtaatcatcatcataccttaaaattgggg |
166 |
Q |
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| T |
47165824 |
acttttgttcatatttaagaccagagagagcgtttagtatcaacatttcatattgaaaa-cgtgagaattggtaatcatcatcataccttaaaattgggg |
47165726 |
T |
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| Q |
167 |
ctttatatcctacaaaacaaattaagcatgtgaag |
201 |
Q |
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| T |
47165725 |
ctttatatcctacaaaacaaattaagcaagtgaag |
47165691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 202 - 263
Target Start/End: Complemental strand, 47165666 - 47165602
Alignment:
| Q |
202 |
acaaaaactgttaaacatgtg---tagatgcattcaatatatgaaaccatgacctcctcaaaata |
263 |
Q |
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| T |
47165666 |
acaaaaactgttcaacatgtgatgtagatgcattcaatatatgaaaccatgacatactcaaaata |
47165602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 147 - 201
Target Start/End: Complemental strand, 48696137 - 48696083
Alignment:
| Q |
147 |
atcataccttaaaattggggctttatatcctacaaaacaaattaagcatgtgaag |
201 |
Q |
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| T |
48696137 |
atcataccttataattggagattcatatcctacaaaacaaataaagcatgtgaag |
48696083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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