View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20657_high_1 (Length: 509)
Name: NF20657_high_1
Description: NF20657
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20657_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 7500477 - 7500243
Alignment:
| Q |
1 |
agttcttattctaattaatacagctacattagtgctaagcaaacttcatgaaacagaaaccttcaacttctgtaccaaacaagcctaaaacatagataga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7500477 |
agttcttattctaattaatacagctacattagtgctaagcaaacttcatgaaacagaaaccttcaacttctgtaccaaacaagcctaaaacatagataga |
7500378 |
T |
|
| Q |
101 |
aacatatgcataaaaaacaacttattattttaatacacaacatataagtagggaacccccttgaaagttaagacacaaatcacacattcctacgcatctt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7500377 |
aacatatgcataaaaaacaacttattattttaatacacaacatataagtagggaacccccttgaaagttaagacacaaatcacacattcctacgcatctt |
7500278 |
T |
|
| Q |
201 |
cagaactctccttccttcatagctcctccaaccgc |
235 |
Q |
| |
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|||||||||||||||||||||||| |||||||||| |
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| T |
7500277 |
cagaactctccttccttcatagctactccaaccgc |
7500243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 15171698 - 15171463
Alignment:
| Q |
1 |
agttcttattctaattaatacagctacattagtgctaagcaaacttcatgaaacagaaaccttcaacttctgtaccaaacaagcctaaaacat-agatag |
99 |
Q |
| |
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||||||||||||||| |||||||| ||| ||||||||||||||||| ||||||| ||||||||||||||||| |||||||||| | |||| | |||||| |
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| T |
15171698 |
agttcttattctaatcaatacagcctcatcagtgctaagcaaacttcctgaaacataaaccttcaacttctgtgccaaacaagcatgaaaccttagatag |
15171599 |
T |
|
| Q |
100 |
aaacatatgcataaaaaacaacttattattttaatacacaacatataagtagggaacccccttgaaagttaagacacaaatcacacattcctacgcatct |
199 |
Q |
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||||||||||||||| |||| ||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| |||||||||||| |
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| T |
15171598 |
aaacatatgcataaataacagcttattattttaatacacaacatataagtagtgaaccctcttgaaagttaagacacaaatcacacactcctacgcatct |
15171499 |
T |
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| Q |
200 |
tcagaactctccttccttcatagctcctccaaccgc |
235 |
Q |
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|||||||||| ||||| ||| |||| |||||||||| |
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| T |
15171498 |
tcagaactcttcttccatcaaagctactccaaccgc |
15171463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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