View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20657_low_2 (Length: 490)
Name: NF20657_low_2
Description: NF20657
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20657_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 315; Significance: 1e-177; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 19 - 345
Target Start/End: Original strand, 1132545 - 1132871
Alignment:
| Q |
19 |
aagattaagagtaatgttatttgtcaagaaagtgttatacaagaaagagaaaaatacataaaaataaaatattcgaccaatcaaattatatctatttgat |
118 |
Q |
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| T |
1132545 |
aagattaagagtaatgttatttgtcaagaaagtgttatacaagaaagagaaaaatacataaaaataaaatattcgaccaatcaaattatatctatttgat |
1132644 |
T |
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| Q |
119 |
catacatgagatcatatgtggttagagaattctttcgtttcttatcgaacttctctcatgacaataaatattttttcctgaattaataggttggcaactc |
218 |
Q |
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| T |
1132645 |
catacatgagatcgtacgtggttagagaattctttcgtttcttatcgaacttctctcatgataataaatattttttcctgaattaataggttggcaactc |
1132744 |
T |
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| Q |
219 |
aattttgcctaatcaatttttcatatgtagcatgatttgttaccttctttaaggatattcctttcatttacacgtctttattttttaaaaaagaaacaat |
318 |
Q |
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| T |
1132745 |
aattttgcctaatcaatttttcatatgtagcatgatttgttaccttctttaaggatattcctttcatttacacgtctttattttttaaaaaagaaacaat |
1132844 |
T |
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| Q |
319 |
tcattaggttgtttttgctttccaagc |
345 |
Q |
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| T |
1132845 |
tcattaggttgtttttgctttccaagc |
1132871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 418 - 490
Target Start/End: Original strand, 1132944 - 1133016
Alignment:
| Q |
418 |
gaagtaacaaaacactccacctctttcacaaggacccactaagattgtgggcaataatactattactagctta |
490 |
Q |
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| T |
1132944 |
gaagtaacaaaacactccacctctttcacaaggacccactaagattgtgggcaataatactattactagctta |
1133016 |
T |
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