View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20657_low_3 (Length: 245)
Name: NF20657_low_3
Description: NF20657
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20657_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 221; Significance: 1e-122; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 44840198 - 44839978
Alignment:
| Q |
1 |
agctggaagagctgctggaaaccttcgacggacaccaaatactggttatatgagacctgctggtagaggctatggaaggccccatccaggtacaggtgga |
100 |
Q |
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| T |
44840198 |
agctggaagagctgctggaaaccttcgacggacaccaaatactggttatatgagacctgctggtagaggctatggaaggccccatccaggtacaggtgga |
44840099 |
T |
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| Q |
101 |
tatggatacaatgggacttctaatcctatcattcgtcctcctccggagggtgtctgcaaccggaaatcaatgcatgtaagggatgaaattgtaccagagg |
200 |
Q |
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| T |
44840098 |
tatggatacaatgggacttctaatcctatcattcgtcctcctccggagggtgtctgcaaccggaaatcaatgcatgtaagggatgaaattgtaccagagg |
44839999 |
T |
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| Q |
201 |
agtttgaatttgaacagaaga |
221 |
Q |
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| T |
44839998 |
agtttgaatttgaacagaaga |
44839978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 44851958 - 44851751
Alignment:
| Q |
1 |
agctggaagagctgctggaaaccttcgacggacaccaaatactggttatatgagacctgctggtagaggctatggaaggccccatccaggtacaggtgga |
100 |
Q |
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||||||||||||||||||||||| | | |||||||||| |||||||||||||||| |||||||||||| ||||||||||||| |||| || |||||| |
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| T |
44851958 |
agctggaagagctgctggaaacccctggcagacaccaaatgctggttatatgagacccgctggtagaggcaatggaaggccccagccagccactggtgga |
44851859 |
T |
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| Q |
101 |
tatggatacaatgggacttctaatcctatcattcgtcctcctccggagggtgtctgcaaccggaaatcaatgcatgtaagggatgaaattgtaccagagg |
200 |
Q |
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||||||||||||| |||||||||||| ||||||| |||||||| |||||| ||| ||| ||||||||| |||| |||| |||||||||||||||||| |
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| T |
44851858 |
tatggatacaatgtgacttctaatcccatcattcctcctcctctacagggtggctggaactggaaatcaactcatgcaaggaatgaaattgtaccagagg |
44851759 |
T |
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| Q |
201 |
agtttgaa |
208 |
Q |
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| T |
44851758 |
agtttgaa |
44851751 |
T |
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