View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20657_low_4 (Length: 213)
Name: NF20657_low_4
Description: NF20657
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20657_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 144; Significance: 7e-76; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 51 - 194
Target Start/End: Complemental strand, 35907901 - 35907758
Alignment:
| Q |
51 |
aatcaaacctgtacttttatcagcaatatttggagtgccaacagcagttgcttctaacggttgcccagaggccagatggcaaatcctacaaatcatttcg |
150 |
Q |
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| T |
35907901 |
aatcaaacctgtacttttatcagcaatatttggagtgccaacagcagttgcttctaacggttgcccagaggccagatggcaaatcctacaaatcatttcg |
35907802 |
T |
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| Q |
151 |
tcatccaaattttcaccaaaaccttcacatgtgccacagttcat |
194 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35907801 |
tcatccaaattttcaccaaaaccttcacatgtgccacagttcat |
35907758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 51 - 166
Target Start/End: Complemental strand, 35915496 - 35915371
Alignment:
| Q |
51 |
aatcaaacctgtacttttatcagcaatatttggagtgccaacagcagtt---------gcttctaacggttgcccagaggccagatggcaaatc-ctaca |
140 |
Q |
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| T |
35915496 |
aatcaaatctgtatttttattagcactgtgtggagtgccaacagcagttgcttgacttgcttctaacggttgctcagagtccagatgagaaatctctaca |
35915397 |
T |
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| Q |
141 |
aatcatttcgtcatccaaattttcac |
166 |
Q |
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||||||||| |||||||||||||||| |
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| T |
35915396 |
aatcatttcatcatccaaattttcac |
35915371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 144; Significance: 7e-76; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 51 - 194
Target Start/End: Complemental strand, 33911294 - 33911151
Alignment:
| Q |
51 |
aatcaaacctgtacttttatcagcaatatttggagtgccaacagcagttgcttctaacggttgcccagaggccagatggcaaatcctacaaatcatttcg |
150 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33911294 |
aatcaaacctgtacttttatcagcaatatttggagtgccaacagcagttgcttctaacggttgcccagaggccagatggcaaatcctacaaatcatttcg |
33911195 |
T |
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| Q |
151 |
tcatccaaattttcaccaaaaccttcacatgtgccacagttcat |
194 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33911194 |
tcatccaaattttcaccaaaaccttcacatgtgccacagttcat |
33911151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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