View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20658_high_5 (Length: 365)
Name: NF20658_high_5
Description: NF20658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20658_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 240; Significance: 1e-133; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 110 - 349
Target Start/End: Complemental strand, 52121520 - 52121281
Alignment:
| Q |
110 |
aaacaaattagagtgcgttttgatcacacacttgttaattactatgttttaaaatgttgaccgaaagctgttcattaatactagaaacaactatacatgt |
209 |
Q |
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| T |
52121520 |
aaacaaattagagtgcgttttgatcacacacttgttaattactatgttttaaaatgttgaccgaaagctgttcattaatactagaaacaactatacatgt |
52121421 |
T |
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| Q |
210 |
tgatgcaaatacaaacacatgaagacataatcccaaccaactctgtcactcacctcttattaaaattctcctttctctatttcttctctcacacactcaa |
309 |
Q |
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| T |
52121420 |
tgatgcaaatacaaacacatgaagacataatcccaaccaactctgtcactcacctcttattaaaattctcctttctctatttcttctctcacacactcaa |
52121321 |
T |
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| Q |
310 |
atctcacgcatcttcctctgtttctcacacgatcaacttg |
349 |
Q |
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| T |
52121320 |
atctcacgcatcttcctctgtttctcacacgatcaacttg |
52121281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 52121643 - 52121577
Alignment:
| Q |
1 |
agtatttaaggtctcatcattttagaagtgagcttcaagtaaaacggtaggatggatataattttta |
67 |
Q |
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| T |
52121643 |
agtatttaaggtctcgttattttagaagtgagttctaagtaaaactgtaggatggacataattttta |
52121577 |
T |
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