View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20658_high_7 (Length: 255)
Name: NF20658_high_7
Description: NF20658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20658_high_7 |
 | |
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| [»] scaffold0415 (1 HSPs) |
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| [»] scaffold0559 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 241; Significance: 1e-133; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 249
Target Start/End: Original strand, 40805282 - 40805530
Alignment:
| Q |
1 |
tcctatactgattctttctatgcataaattttggcaccccactttaatctggcaagctattttccctgtaataatcttatgacatcttttgacttgaaac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40805282 |
tcctatactgattctttctatgcataaattttggcaccccactttaatctggcaagctattttccctgtaataatcttatgacatcttttgacttgaaac |
40805381 |
T |
|
| Q |
101 |
catggttgctcctcctggcttctaatattagaattgctgcaatatttgtgtccttcccaacatccaaaagctaataatctctgcaaaatacagataaaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
40805382 |
catggttgctcctcctggcttctaatattagagttgctgcaatatttgtgtccttcccaacatccaaaagctagtaatctctgcaaaatacagataaaaa |
40805481 |
T |
|
| Q |
201 |
ttaattataaataagttaaattcaacattaaattattagtagatgtctt |
249 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40805482 |
ttaattataaataagttaaattcaacattaaattattagtagatgtctt |
40805530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 1 - 182
Target Start/End: Original strand, 40812101 - 40812282
Alignment:
| Q |
1 |
tcctatactgattctttctatgcataaattttggcaccccactttaatctggcaagctattttccctgtaataatcttatgacatcttttgacttgaaac |
100 |
Q |
| |
|
||||||||||||||||||||| || |||||||||| |||||||||||||||||||||||||||||| | | || ||||||||||||||| ||||||||| |
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| T |
40812101 |
tcctatactgattctttctatacacaaattttggctccccactttaatctggcaagctattttcccagagaaaaccttatgacatcttttaacttgaaac |
40812200 |
T |
|
| Q |
101 |
catggttgctcctcctggcttctaatattagaattgctgcaatatttgtgtccttcccaacatccaaaagctaataatctct |
182 |
Q |
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|||||||| |||| |||||||||| | |||||||| ||||||||||||| |||||||||||||||||| ||| |||||||| |
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| T |
40812201 |
catggttgttccttttggcttctaaaagtagaattgttgcaatatttgtggccttcccaacatccaaaaactagtaatctct |
40812282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 1 - 189
Target Start/End: Original strand, 40825826 - 40826014
Alignment:
| Q |
1 |
tcctatactgattctttctatgcataaattttggcaccccactttaatctggcaagctattttccctgtaataatcttatgacatcttttgacttgaaac |
100 |
Q |
| |
|
|||||| ||||||||||||||||| | ||||||| | ||||||||||||||||||||||||||||||| |||| ||||||||||||||| |||| ||| |
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| T |
40825826 |
tcctatgctgattctttctatgcacatattttgggatcccactttaatctggcaagctattttccctgatataaccttatgacatcttttaactttgaac |
40825925 |
T |
|
| Q |
101 |
catggttgctcctcctggcttctaatattagaattgctgcaatatttgtgtccttcccaacatccaaaagctaataatctctgcaaaat |
189 |
Q |
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|
|||||||||||||| || ||||| | | | |||||| ||||||||||||| |||||||| ||||||||||||| ||||||||||||||| |
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| T |
40825926 |
catggttgctcctcttgccttcttaaacttgaattgttgcaatatttgtggccttcccagcatccaaaagctagtaatctctgcaaaat |
40826014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 1 - 178
Target Start/End: Original strand, 40807004 - 40807181
Alignment:
| Q |
1 |
tcctatactgattctttctatgcataaattttggcaccccactttaatctggcaagctattttccctgtaataatcttatgacatcttttgacttgaaac |
100 |
Q |
| |
|
||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| | | || ||||||||||||||| |||| ||| |
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| T |
40807004 |
tcctatactgattctttctatacacaaattttggcaccccactttaatctggcaagctattttcccagagaaaaccttatgacatcttttaactttgaac |
40807103 |
T |
|
| Q |
101 |
catggttgctcctcctggcttctaatattagaattgctgcaatatttgtgtccttcccaacatccaaaagctaataat |
178 |
Q |
| |
|
|||||||||||||| |||||| | | | | ||||| |||||||||||| |||||||||||||||||||||| |||| |
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|
| T |
40807104 |
catggttgctcctcttggctttttaaacttgaattattgcaatatttgtagccttcccaacatccaaaagctagtaat |
40807181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 1 - 178
Target Start/End: Original strand, 40817260 - 40817437
Alignment:
| Q |
1 |
tcctatactgattctttctatgcataaattttggcaccccactttaatctggcaagctattttccctgtaataatcttatgacatcttttgacttgaaac |
100 |
Q |
| |
|
|||| ||||||||||||||||||| ||||||||| |||| ||||||||||| ||||||| ||| ||||| ||||||||| ||||||||| ||||| ||| |
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| T |
40817260 |
tcctgtactgattctttctatgcacaaattttgggaccctactttaatctgacaagctacttttcctgtgataatcttagtacatcttttaacttggaac |
40817359 |
T |
|
| Q |
101 |
catggttgctcctcctggcttctaatattagaattgctgcaatatttgtgtccttcccaacatccaaaagctaataat |
178 |
Q |
| |
|
|||||||| ||||| ||||||| || |||||||||| | |||||||||| |||||||||||||||||||||| |||| |
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| T |
40817360 |
catggttgttcctcttggcttccaaaattagaattgttacaatatttgtagccttcccaacatccaaaagctagtaat |
40817437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0415 (Bit Score: 94; Significance: 6e-46; HSPs: 1)
Name: scaffold0415
Description:
Target: scaffold0415; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 1 - 178
Target Start/End: Complemental strand, 15104 - 14927
Alignment:
| Q |
1 |
tcctatactgattctttctatgcataaattttggcaccccactttaatctggcaagctattttccctgtaataatcttatgacatcttttgacttgaaac |
100 |
Q |
| |
|
|||| ||||||||||||||||||| ||||||||| |||| ||||||||||| ||||||| ||| ||||| ||||||||| ||||||||| ||||| ||| |
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| T |
15104 |
tcctgtactgattctttctatgcacaaattttgggaccctactttaatctgacaagctacttttcctgtgataatcttagtacatcttttaacttggaac |
15005 |
T |
|
| Q |
101 |
catggttgctcctcctggcttctaatattagaattgctgcaatatttgtgtccttcccaacatccaaaagctaataat |
178 |
Q |
| |
|
|||||||| ||||| ||||||| || |||||||||| | |||||||||| |||||||||||||||||||||| |||| |
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| T |
15004 |
catggttgttcctcttggcttccaaaattagaattgttacaatatttgtagccttcccaacatccaaaagctagtaat |
14927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0559 (Bit Score: 89; Significance: 5e-43; HSPs: 1)
Name: scaffold0559
Description:
Target: scaffold0559; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 1 - 169
Target Start/End: Complemental strand, 7625 - 7457
Alignment:
| Q |
1 |
tcctatactgattctttctatgcataaattttggcaccccactttaatctggcaagctattttccctgtaataatcttatgacatcttttgacttgaaac |
100 |
Q |
| |
|
||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| | | || ||||||||||||||| |||| ||| |
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| T |
7625 |
tcctatactgattctttctatacacaaattttggcaccccactttaatctggcaagctattttcccagagaaaaccttatgacatcttttaactttgaac |
7526 |
T |
|
| Q |
101 |
catggttgctcctcctggcttctaatattagaattgctgcaatatttgtgtccttcccaacatccaaaa |
169 |
Q |
| |
|
|||||||||||||| |||||| | | | | ||||| |||||||||||| |||||||||||||||||| |
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|
| T |
7525 |
catggttgctcctcttggctttttaaacttgaattattgcaatatttgtagccttcccaacatccaaaa |
7457 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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