View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20658_low_1 (Length: 846)
Name: NF20658_low_1
Description: NF20658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20658_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 677; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 677; E-Value: 0
Query Start/End: Original strand, 20 - 769
Target Start/End: Original strand, 46497981 - 46498732
Alignment:
| Q |
20 |
aagaaaaggtgtgggttggagtgtagcttgtactagaagactgaagttggaaagcaaccaaccatttttattgcaacctcagagaattcgatgctctctc |
119 |
Q |
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| T |
46497981 |
aagaaaaggtgtgggttggagtgtagcttgtactagaagactgaagttggaaagcaaccaaccatttttattgcaacctcagagaattcgatgctctctc |
46498080 |
T |
|
| Q |
120 |
tctttccnnnnnnnattttctatttcaaaatcatatactcttttgtttttagcatcctatgaaatatacgatttcagacattttattttaatttaaacaa |
219 |
Q |
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| T |
46498081 |
tctttcctttttt-attttctatttcaaaatcatatactcttttgtttttagcatcctatgaaatatacgatttcagacattttattttaatttaaacaa |
46498179 |
T |
|
| Q |
220 |
gagtgctatttgcaattgaaggtaagttttacatattatttgtgttcaaagtttcgtacaatattgttaggagcagtctaactcattcgttccactatgt |
319 |
Q |
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| T |
46498180 |
gagtgctatttgcaattgaaggtgagttttacatattatttgtgttcaaagtttcgtacaatattgttaggagcagtctaactcattcgttccactatgt |
46498279 |
T |
|
| Q |
320 |
tcagcccatgtgccagaatgatgttcgtatatacgggtaacataactacccaaaggattgaaaggaacgaagctagggatattaacacttgaaccaatat |
419 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46498280 |
tcagcccatgtgccagaatgatgttcgtatatacggataacataactacccataggattgaaaggaacgaagctagggatattaacacttgaaccaatat |
46498379 |
T |
|
| Q |
420 |
taattttaatttgtatttcatagtttataatcatgaagtgtagttcaattataaaatatattttgcagtcttatataatgacttaaa---ggataataca |
516 |
Q |
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| T |
46498380 |
taattttaatttgtatttcatagtttataatcatgaggtgtagttcaattataaaatatattttgcagtcttatataatgacttaaaaggggataataca |
46498479 |
T |
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| Q |
517 |
tagtatacgtatggaattagcttaatatctaatgaaaatataatatcttgcaacatcaaccatttttgtaaggatattttaaaattgatgatataccatg |
616 |
Q |
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|||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
46498480 |
tagtatacgtatggaattggcttaatatccaatgaaaatataatatcttgcaacatcaaccacttttgtaaggatattttaaaattgatgatataccatg |
46498579 |
T |
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| Q |
617 |
aaaaagatagtgatatctctcatcaaatgataattaggagtagggatgacaaaagtgactaacgctccctaattaggagtggaaatacgctgagccgata |
716 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
46498580 |
aaaaagatagtgatatctctcatcaaataataattaggagtagggatgacaaaagtgactaaccctccctaattaggagtggaaatacgctgagccgata |
46498679 |
T |
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| Q |
717 |
tcgactttgtaagactagagtctagcttgatgagaaaattcaaggcctaggcc |
769 |
Q |
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| T |
46498680 |
tcgactttgtaagactagagtctagcttgatgagaaaattcaaggcctaggcc |
46498732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 122; E-Value: 4e-62
Query Start/End: Original strand, 710 - 835
Target Start/End: Original strand, 46498730 - 46498855
Alignment:
| Q |
710 |
gccgatatcgactttgtaagactagagtctagcttgatgagaaaattcaaggcctaggccacatttgtagcctgttatatagatttatttttatacttgt |
809 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
46498730 |
gccgatatcgactttgtaagactagagtctagcttgatgagaaaattcaaggcctaggccacatttgtagcctgttatatagatttatttttatactagt |
46498829 |
T |
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| Q |
810 |
gtatgacctttttgaagtataatcta |
835 |
Q |
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|||||||||||||||||||||||||| |
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| T |
46498830 |
gtatgacctttttgaagtataatcta |
46498855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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