View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20658_low_2 (Length: 444)

Name: NF20658_low_2
Description: NF20658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20658_low_2
NF20658_low_2
[»] chr8 (9 HSPs)
chr8 (1-425)||(34279584-34280007)
chr8 (1-56)||(5967260-5967315)
chr8 (1-58)||(31762239-31762296)
chr8 (6-57)||(9418586-9418637)
chr8 (57-124)||(34276046-34276115)
chr8 (11-57)||(33220820-33220866)
chr8 (10-56)||(33228168-33228214)
chr8 (8-57)||(43641003-43641052)
chr8 (9-57)||(33220023-33220070)
[»] chr2 (8 HSPs)
chr2 (1-56)||(8273245-8273300)
chr2 (1-56)||(22788008-22788063)
chr2 (11-58)||(37893041-37893088)
chr2 (143-292)||(12201678-12201828)
chr2 (11-57)||(24929366-24929412)
chr2 (1-58)||(22727660-22727717)
chr2 (143-292)||(40754828-40754977)
chr2 (1-57)||(25389873-25389929)
[»] chr7 (6 HSPs)
chr7 (1-53)||(5195-5247)
chr7 (7-57)||(33839471-33839521)
chr7 (8-52)||(38386178-38386222)
chr7 (1-56)||(19365418-19365473)
chr7 (1-57)||(5061751-5061807)
chr7 (11-56)||(5060848-5060893)
[»] chr4 (12 HSPs)
chr4 (1-53)||(24974169-24974221)
chr4 (1-55)||(27992116-27992170)
chr4 (1-58)||(55527936-55527993)
chr4 (1-53)||(36501888-36501940)
chr4 (1-56)||(51719797-51719852)
chr4 (1-57)||(23283213-23283269)
chr4 (1-57)||(34235727-34235783)
chr4 (11-57)||(628087-628133)
chr4 (9-58)||(33164536-33164585)
chr4 (1-57)||(45237410-45237466)
chr4 (8-56)||(54208180-54208228)
chr4 (10-50)||(55312075-55312115)
[»] chr6 (7 HSPs)
chr6 (1-56)||(17436564-17436619)
chr6 (1-58)||(31522558-31522615)
chr6 (1-58)||(32275794-32275851)
chr6 (1-56)||(32274184-32274239)
chr6 (9-58)||(807200-807249)
chr6 (1-56)||(14153354-14153409)
chr6 (7-56)||(24326944-24326993)
[»] chr5 (14 HSPs)
chr5 (1-56)||(28677886-28677941)
chr5 (1-56)||(759160-759215)
chr5 (1-56)||(34016002-34016057)
chr5 (1-50)||(6706058-6706107)
chr5 (8-58)||(17636342-17636392)
chr5 (9-58)||(6158973-6159022)
chr5 (1-53)||(5506714-5506766)
chr5 (9-57)||(17644631-17644679)
chr5 (1-56)||(1145141-1145196)
chr5 (6-56)||(36933250-36933300)
chr5 (1-58)||(25759838-25759895)
chr5 (11-52)||(30491828-30491869)
chr5 (1-58)||(34017642-34017699)
chr5 (1-57)||(40266611-40266668)
[»] chr3 (10 HSPs)
chr3 (1-56)||(15040681-15040736)
chr3 (8-56)||(53814591-53814639)
chr3 (1-57)||(35069469-35069525)
chr3 (1-50)||(7665739-7665788)
chr3 (11-56)||(44430418-44430463)
chr3 (11-55)||(13843626-13843670)
chr3 (1-57)||(39645773-39645829)
chr3 (11-57)||(6162715-6162761)
chr3 (11-56)||(4969875-4969920)
chr3 (1-57)||(53824290-53824345)
[»] chr1 (11 HSPs)
chr1 (1-57)||(28446553-28446609)
chr1 (1-56)||(33617644-33617699)
chr1 (1-59)||(5602941-5602999)
chr1 (1-57)||(50065477-50065533)
chr1 (1-56)||(28474792-28474847)
chr1 (1-56)||(33401408-33401463)
chr1 (11-57)||(11821159-11821205)
chr1 (1-59)||(35563361-35563415)
chr1 (1-56)||(28476005-28476060)
chr1 (9-56)||(49033761-49033808)
chr1 (9-58)||(39650194-39650243)


Alignment Details
Target: chr8 (Bit Score: 377; Significance: 0; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 1 - 425
Target Start/End: Original strand, 34279584 - 34280007
Alignment:
Q  1 atttcggtcatttactttgggaattagcgaatccatttggataatgagcagaattcaacattttcacctcttgcaatcagacctttgaaaatattgagat 100  Q
    |||||| ||||||||||| ||||| |||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34279584 atttcgatcatttactttaggaatgagcgaatccatttaagtaatgagcagaattcaacattttcacctcttgcaatcagacctttgaaaatattgagat 34279683  T
Q  101 gctcaaatctctttcaacaaagacagctgaaacaccgatccacttggtgaattattcgatcaaaatcaacatgttttaaattttcccctagagagtggct 200  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  34279684 gctcaaatctctttcaacaaagacagctgaaacaacgatccacttggtgaattattcgatcaaaatcaacatgttttaaattttcccctagacagtggct 34279783  T
Q  201 taataatcctttggattgtttgggagtgcatagttttacgtaggagtttgccttgtgtttcttcaatcatacatttttggttttggtgttgcactctttt 300  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  34279784 taataatcctttggactgtttgggagtgcatagttttacgtaggagtttgccttgtgtttcttcaatcatacatttttggttttggtgttg-actctttt 34279882  T
Q  301 gctatgtgggtggagggagcacctatgttggttataatgttcttgaatctatttgattgttgtaggagttcaaggacaaactatcttttttggatgtttg 400  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34279883 gttatgtgggtggagggagcacctatgttggttataatgttcttgaatctatttgattgttgtaggagttcaaggacaaactatcttttttggatgtttg 34279982  T
Q  401 tttttaggtgttgctagattttact 425  Q
    |||||||||||||||||||||||||    
T  34279983 tttttaggtgttgctagattttact 34280007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 5967260 - 5967315
Alignment:
Q  1 atttcggtcatttactttgggaattagcgaatccatttggataatgagcagaattc 56  Q
    |||||| ||||||||||||||||| ||||||||||||||| |||||||||||||||    
T  5967260 atttcgatcatttactttgggaatgagcgaatccatttgggtaatgagcagaattc 5967315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 31762296 - 31762239
Alignment:
Q  1 atttcggtcatttactttgggaattagcgaatccatttggataatgagcagaattcaa 58  Q
    |||||| | ||||||||||||||| |||||||||||||| ||||||||||||||||||    
T  31762296 atttcgtttatttactttgggaatgagcgaatccatttgaataatgagcagaattcaa 31762239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 6 - 57
Target Start/End: Complemental strand, 9418637 - 9418586
Alignment:
Q  6 ggtcatttactttgggaattagcgaatccatttggataatgagcagaattca 57  Q
    |||| |||||||||||||| |||||| |||||||| ||||||||||||||||    
T  9418637 ggtcttttactttgggaatgagcgaaaccatttgggtaatgagcagaattca 9418586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 57 - 124
Target Start/End: Complemental strand, 34276115 - 34276046
Alignment:
Q  57 aacattttcacctcttgcaatcagacctttgaaaatattgagatg--ctcaaatctctttcaacaaagac 124  Q
    |||||||| ||||||||||||||||| |||||||| |||||||||   ||||||| | ||||||||||||    
T  34276115 aacatttttacctcttgcaatcagacatttgaaaagattgagatgttgtcaaatccccttcaacaaagac 34276046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 11 - 57
Target Start/End: Original strand, 33220820 - 33220866
Alignment:
Q  11 tttactttgggaattagcgaatccatttggataatgagcagaattca 57  Q
    |||||||||||||| || ||| |||||||| ||||||||||||||||    
T  33220820 tttactttgggaatgagtgaaaccatttgggtaatgagcagaattca 33220866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 10 - 56
Target Start/End: Complemental strand, 33228214 - 33228168
Alignment:
Q  10 atttactttgggaattagcgaatccatttggataatgagcagaattc 56  Q
    ||||||||||||||| |  |||||||||||||||| |||||||||||    
T  33228214 atttactttgggaatgattgaatccatttggataaagagcagaattc 33228168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 8 - 57
Target Start/End: Original strand, 43641003 - 43641052
Alignment:
Q  8 tcatttactttgggaattagcgaatccatttggataatgagcagaattca 57  Q
    ||||||||||||| ||| ||| || |||||||| ||||||||||||||||    
T  43641003 tcatttactttggaaatgagccaaaccatttgggtaatgagcagaattca 43641052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 9 - 57
Target Start/End: Complemental strand, 33220070 - 33220023
Alignment:
Q  9 catttactttgggaattagcgaatccatttggataatgagcagaattca 57  Q
    |||||||||||| ||| |||| | |||||||||||||||||||||||||    
T  33220070 catttactttgg-aatgagcggaaccatttggataatgagcagaattca 33220023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 3e-18; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 8273300 - 8273245
Alignment:
Q  1 atttcggtcatttactttgggaattagcgaatccatttggataatgagcagaattc 56  Q
    |||||||||||||||||||||||| ||||||||||||||| |||||||||||||||    
T  8273300 atttcggtcatttactttgggaatgagcgaatccatttgggtaatgagcagaattc 8273245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 22788008 - 22788063
Alignment:
Q  1 atttcggtcatttactttgggaattagcgaatccatttggataatgagcagaattc 56  Q
    |||| ||||||||||||||||||| | | ||||||||||| ||| |||||||||||    
T  22788008 attttggtcatttactttgggaatgaacaaatccatttgggtaaagagcagaattc 22788063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 11 - 58
Target Start/End: Original strand, 37893041 - 37893088
Alignment:
Q  11 tttactttgggaattagcgaatccatttggataatgagcagaattcaa 58  Q
    |||||||||||||| |||||| |||||||| |||| ||||||||||||    
T  37893041 tttactttgggaatgagcgaaaccatttgggtaattagcagaattcaa 37893088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 143 - 292
Target Start/End: Original strand, 12201678 - 12201828
Alignment:
Q  143 cttggtgaattattcgatcaaaatcaacatgttttaaattttcccctagagagtggcttaataatcctttggattgtttgggagtgcatagttttacgta 242  Q
    ||||| |||| ||||||| || ||  ||| ||||||| |||||  ||||  ||||||||  |||||||||||| |||||||| |||||||| |||| |||    
T  12201678 cttggagaatcattcgataaagattgacaggttttaatttttctactagtcagtggcttgctaatcctttggaatgtttgggggtgcatagatttatgta 12201777  T
Q  243 g-gagtttgccttgtgtttcttcaatcatacatttttggttttggtgttgc 292  Q
    |  | || | | ||||||||||||||| |  || ||||||||||| |||||    
T  12201778 gaaaattggtcatgtgtttcttcaatcctttatgtttggttttggggttgc 12201828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 11 - 57
Target Start/End: Original strand, 24929366 - 24929412
Alignment:
Q  11 tttactttgggaattagcgaatccatttggataatgagcagaattca 57  Q
    |||||||||||||| |||||| |||||| | ||||||||||||||||    
T  24929366 tttactttgggaatcagcgaaaccattttggtaatgagcagaattca 24929412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 22727717 - 22727660
Alignment:
Q  1 atttcggtcatttactttgggaattagcgaatccatttggataatgagcagaattcaa 58  Q
    |||| ||||||||||||||||||| ||| |||| |||||| ||| |||||| ||||||    
T  22727717 atttgggtcatttactttgggaataagcaaatctatttgggtaaagagcaggattcaa 22727660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 143 - 292
Target Start/End: Original strand, 40754828 - 40754977
Alignment:
Q  143 cttggtgaattattcgatcaaaatcaacatgttttaaattttcccctagagagtggcttaataatcctttggattgtttgggagtgcatagttttacgta 242  Q
    ||||| |||| |||| ||||| | | ||| ||||||| ||||||  |||  ||||||||  |||||||||||| |||||||| |||||||| |||| |||    
T  40754828 cttggagaatcattcaatcaagaccgacaggttttaatttttccattagtcagtggcttgctaatcctttggaatgtttgggggtgcatagatttatgta 40754927  T
Q  243 ggagtttgccttgtgtttcttcaatcatacatttttggttttggtgttgc 292  Q
    | |  |   | ||||||||||||||| |  || ||||||||||| |||||    
T  40754928 gaaaatgttcctgtgtttcttcaatcctttatgtttggttttggggttgc 40754977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 25389873 - 25389929
Alignment:
Q  1 atttcggtcatttactttgggaattagcgaatccatttggataatgagcagaattca 57  Q
    |||| |||||||||||||| |||| ||| ||||||||||  ||| ||||||||||||    
T  25389873 attttggtcatttactttgagaatgagcaaatccatttgagtaaagagcagaattca 25389929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 2e-16; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 5195 - 5247
Alignment:
Q  1 atttcggtcatttactttgggaattagcgaatccatttggataatgagcagaa 53  Q
    |||||||||||||||||||||||| ||||||||||||||| ||||||||||||    
T  5195 atttcggtcatttactttgggaatgagcgaatccatttgggtaatgagcagaa 5247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 7 - 57
Target Start/End: Original strand, 33839471 - 33839521
Alignment:
Q  7 gtcatttactttgggaattagcgaatccatttggataatgagcagaattca 57  Q
    ||||||||||||| |||| ||||||||||||||||||| ||||||||||||    
T  33839471 gtcatttactttgagaatgagcgaatccatttggataaagagcagaattca 33839521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 8 - 52
Target Start/End: Complemental strand, 38386222 - 38386178
Alignment:
Q  8 tcatttactttgggaattagcgaatccatttggataatgagcaga 52  Q
    ||||||||||||| ||| |||||||||||||||||||||||||||    
T  38386222 tcatttactttggaaatgagcgaatccatttggataatgagcaga 38386178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 19365418 - 19365473
Alignment:
Q  1 atttcggtcatttactttgggaattagcgaatccatttggataatgagcagaattc 56  Q
    |||||||||||||  ||||||||| ||||||||||||| | |||||||||||||||    
T  19365418 atttcggtcattttatttgggaatgagcgaatccatttaggtaatgagcagaattc 19365473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 5061751 - 5061807
Alignment:
Q  1 atttcggtcatttactttgggaattagcgaatccatttggataatgagcagaattca 57  Q
    |||||| ||||||| ||||| ||| || |||||||||||| ||||||||||||||||    
T  5061751 atttcgttcatttattttggaaatgagtgaatccatttgggtaatgagcagaattca 5061807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 11 - 56
Target Start/End: Complemental strand, 5060893 - 5060848
Alignment:
Q  11 tttactttgggaattagcgaatccatttggataatgagcagaattc 56  Q
    |||||||||||||| |||| | |||||||||||||||| |||||||    
T  5060893 tttactttgggaatgagcggaaccatttggataatgagtagaattc 5060848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 24974169 - 24974221
Alignment:
Q  1 atttcggtcatttactttgggaattagcgaatccatttggataatgagcagaa 53  Q
    |||||||||||||||||||||||| ||| ||||||||||||||||||||||||    
T  24974169 atttcggtcatttactttgggaatgagcaaatccatttggataatgagcagaa 24974221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 27992170 - 27992116
Alignment:
Q  1 atttcggtcatttactttgggaattagcgaatccatttggataatgagcagaatt 55  Q
    |||||||||||||||||||||||| ||| |||||||||| |||||||||| ||||    
T  27992170 atttcggtcatttactttgggaatgagcaaatccatttgaataatgagcataatt 27992116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 55527936 - 55527993
Alignment:
Q  1 atttcggtcatttactttgggaattagcgaatccatttggataatgagcagaattcaa 58  Q
    ||||||||||||| |||||| ||| |||||||||||||  ||||||||||||||||||    
T  55527936 atttcggtcatttgctttggaaatgagcgaatccatttaaataatgagcagaattcaa 55527993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 36501888 - 36501940
Alignment:
Q  1 atttcggtcatttactttgggaattagcgaatccatttggataatgagcagaa 53  Q
    |||||| ||||||||||||||||| ||||||||||| ||| ||||||||||||    
T  36501888 atttcgatcatttactttgggaatgagcgaatccatctgggtaatgagcagaa 36501940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 51719797 - 51719852
Alignment:
Q  1 atttcggtcatttactttgggaattagcgaatccatttggataatgagcagaattc 56  Q
    |||||||| ||||||||||| ||| ||||||||||||||| |||| ||||||||||    
T  51719797 atttcggttatttactttggaaataagcgaatccatttgggtaataagcagaattc 51719852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 23283269 - 23283213
Alignment:
Q  1 atttcggtcatttactttgggaattagcgaatccatttggataatgagcagaattca 57  Q
    |||||||||||||||||||| ||| |||||| | ||||| ||||| |||||||||||    
T  23283269 atttcggtcatttactttggaaataagcgaaactatttgaataatcagcagaattca 23283213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 34235727 - 34235783
Alignment:
Q  1 atttcggtcatttactttgggaattagcgaatccatttggataatgagcagaattca 57  Q
    |||||||||||||||||| ||||| |||| | |||||||| ||||||||| ||||||    
T  34235727 atttcggtcatttactttaggaatgagcggaaccatttgggtaatgagcataattca 34235783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 11 - 57
Target Start/End: Complemental strand, 628133 - 628087
Alignment:
Q  11 tttactttgggaattagcgaatccatttggataatgagcagaattca 57  Q
    |||||||| ||||| |||||| |||||||| ||||||||||||||||    
T  628133 tttactttaggaatgagcgaaaccatttgggtaatgagcagaattca 628087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 9 - 58
Target Start/End: Original strand, 33164536 - 33164585
Alignment:
Q  9 catttactttgggaattagcgaatccatttggataatgagcagaattcaa 58  Q
    ||||||||||| |||| |||| | |||||||| |||||||||||||||||    
T  33164536 catttactttgagaatgagcggaaccatttgggtaatgagcagaattcaa 33164585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 45237466 - 45237410
Alignment:
Q  1 atttcggtcatttactttgggaattagcgaatccatttggataatgagcagaattca 57  Q
    ||||| || ||||||||| | ||| ||||||||||||||  ||||||||||||||||    
T  45237466 atttcagttatttactttagaaataagcgaatccatttgagtaatgagcagaattca 45237410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 8 - 56
Target Start/End: Complemental strand, 54208228 - 54208180
Alignment:
Q  8 tcatttactttgggaattagcgaatccatttggataatgagcagaattc 56  Q
    ||||||||||||||||| ||| || |||||||||||| ||||| |||||    
T  54208228 tcatttactttgggaatgagcaaaaccatttggataaagagcataattc 54208180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 10 - 50
Target Start/End: Complemental strand, 55312115 - 55312075
Alignment:
Q  10 atttactttgggaattagcgaatccatttggataatgagca 50  Q
    ||||||||||||||| ||||| |||||||| ||||||||||    
T  55312115 atttactttgggaatgagcgattccatttgaataatgagca 55312075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 7e-16; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 17436564 - 17436619
Alignment:
Q  1 atttcggtcatttactttgggaattagcgaatccatttggataatgagcagaattc 56  Q
    |||||||||||||||||||||||  ||||||||||||||| |||||||||||||||    
T  17436564 atttcggtcatttactttgggaacgagcgaatccatttgggtaatgagcagaattc 17436619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 31522558 - 31522615
Alignment:
Q  1 atttcggtcatttactttgggaattagcgaatccatttggataatgagcagaattcaa 58  Q
    |||||||||||||||||||||||| |||| | |||||||| |||||||||||||||||    
T  31522558 atttcggtcatttactttgggaatgagcggaaccatttgggtaatgagcagaattcaa 31522615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 32275794 - 32275851
Alignment:
Q  1 atttcggtcatttactttgggaattagcgaatccatttggataatgagcagaattcaa 58  Q
    ||||| |||||||||||||||||| |||| | |||||||||||||||||| |||||||    
T  32275794 atttcagtcatttactttgggaatgagcggaaccatttggataatgagcataattcaa 32275851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 32274239 - 32274184
Alignment:
Q  1 atttcggtcatttactttgggaattagcgaatccatttggataatgagcagaattc 56  Q
    |||||| ||||||||||||||||| |||||||||||||||  |||||||| |||||    
T  32274239 atttcgatcatttactttgggaatgagcgaatccatttgggcaatgagcataattc 32274184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 9 - 58
Target Start/End: Original strand, 807200 - 807249
Alignment:
Q  9 catttactttgggaattagcgaatccatttggataatgagcagaattcaa 58  Q
    |||||||||| ||||| |||||||| |||||||||| |||||||||||||    
T  807200 catttactttaggaatgagcgaatctatttggataaagagcagaattcaa 807249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 14153409 - 14153354
Alignment:
Q  1 atttcggtcatttactttgggaattagcgaatccatttggataatgagcagaattc 56  Q
    |||| ||||||||||||||||||| ||| ||  ||||||| |||||||||||||||    
T  14153409 attttggtcatttactttgggaatgagcaaaatcatttgggtaatgagcagaattc 14153354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 7 - 56
Target Start/End: Complemental strand, 24326993 - 24326944
Alignment:
Q  7 gtcatttactttgggaattagcgaatccatttggataatgagcagaattc 56  Q
    |||||||| ||||||||| ||||||| ||||||  |||||||||||||||    
T  24326993 gtcatttattttgggaatgagcgaattcatttgagtaatgagcagaattc 24326944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 7e-16; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 28677941 - 28677886
Alignment:
Q  1 atttcggtcatttactttgggaattagcgaatccatttggataatgagcagaattc 56  Q
    |||||||||||||||||| ||||| ||||| |||||||||||||||||||||||||    
T  28677941 atttcggtcatttactttaggaatgagcgattccatttggataatgagcagaattc 28677886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 759215 - 759160
Alignment:
Q  1 atttcggtcatttactttgggaattagcgaatccatttggataatgagcagaattc 56  Q
    |||||||||||||||||||||||| | ||||||||||| | |||||||||||||||    
T  759215 atttcggtcatttactttgggaatgatcgaatccatttaggtaatgagcagaattc 759160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 34016057 - 34016002
Alignment:
Q  1 atttcggtcatttactttgggaattagcgaatccatttggataatgagcagaattc 56  Q
    ||||| |||||||||||||||||| ||||||||||||| | |||||||||||||||    
T  34016057 atttcagtcatttactttgggaatgagcgaatccatttaggtaatgagcagaattc 34016002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 6706058 - 6706107
Alignment:
Q  1 atttcggtcatttactttgggaattagcgaatccatttggataatgagca 50  Q
    ||||| |||||||||||||| ||| |||||||||||||||||||||||||    
T  6706058 atttcagtcatttactttggaaatgagcgaatccatttggataatgagca 6706107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 8 - 58
Target Start/End: Complemental strand, 17636392 - 17636342
Alignment:
Q  8 tcatttactttgggaattagcgaatccatttggataatgagcagaattcaa 58  Q
    ||||||| ||||||||| ||||||||||||| | |||||||||||||||||    
T  17636392 tcatttattttgggaatgagcgaatccatttaggtaatgagcagaattcaa 17636342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 9 - 58
Target Start/End: Original strand, 6158973 - 6159022
Alignment:
Q  9 catttactttgggaattagcgaatccatttggataatgagcagaattcaa 58  Q
    |||||||||||||||| |||||||||||||   |||||||||||||||||    
T  6158973 catttactttgggaatgagcgaatccatttaagtaatgagcagaattcaa 6159022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 5506714 - 5506766
Alignment:
Q  1 atttcggtcatttactttgggaattagcgaatccatttggataatgagcagaa 53  Q
    |||||| ||||||||||||||||| || ||||||| ||| |||||||||||||    
T  5506714 atttcgatcatttactttgggaatgagtgaatccagttgaataatgagcagaa 5506766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 9 - 57
Target Start/End: Original strand, 17644631 - 17644679
Alignment:
Q  9 catttactttgggaattagcgaatccatttggataatgagcagaattca 57  Q
    |||||||||||||||| ||||||||||||| | ||||||||| ||||||    
T  17644631 catttactttgggaatgagcgaatccatttcggtaatgagcacaattca 17644679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 1145196 - 1145141
Alignment:
Q  1 atttcggtcatttactttgggaattagcgaatccatttggataatgagcagaattc 56  Q
    |||| ||||||||||||||||||| |||||| |  ||||||||||||||| |||||    
T  1145196 attttggtcatttactttgggaatgagcgaaactgtttggataatgagcataattc 1145141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 6 - 56
Target Start/End: Original strand, 36933250 - 36933300
Alignment:
Q  6 ggtcatttactttgggaattagcgaatccatttggataatgagcagaattc 56  Q
    |||| ||||||||| |||| |||||| ||||||| ||||||||||||||||    
T  36933250 ggtcttttactttgagaataagcgaaaccatttgaataatgagcagaattc 36933300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 25759895 - 25759838
Alignment:
Q  1 atttcggtcatttactttgggaattagcgaatccatttggataatgagcagaattcaa 58  Q
    |||| ||||||||||||| ||||| |||  |||| ||||||||| |||||||||||||    
T  25759895 attttggtcatttactttaggaatgagcagatccgtttggataaagagcagaattcaa 25759838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 11 - 52
Target Start/End: Original strand, 30491828 - 30491869
Alignment:
Q  11 tttactttgggaattagcgaatccatttggataatgagcaga 52  Q
    |||||||||||||| ||||||| ||||||| |||||||||||    
T  30491828 tttactttgggaatgagcgaattcatttgggtaatgagcaga 30491869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 34017642 - 34017699
Alignment:
Q  1 atttcggtcatttactttgggaattagcgaatccatttggataatgagcagaattcaa 58  Q
    |||||||||||||||||||  ||| |||| | |||||||  |||||||||||||||||    
T  34017642 atttcggtcatttactttgaaaatgagcggaaccatttgagtaatgagcagaattcaa 34017699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 40266611 - 40266668
Alignment:
Q  1 atttcggtcatttactttgggaattagcgaatccatttggat-aatgagcagaattca 57  Q
    |||| ||||||||||||||||||| ||| ||||||||||| | || ||||||||||||    
T  40266611 attttggtcatttactttgggaatgagcaaatccatttgggtaaaagagcagaattca 40266668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 7e-16; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 15040736 - 15040681
Alignment:
Q  1 atttcggtcatttactttgggaattagcgaatccatttggataatgagcagaattc 56  Q
    ||||| |||||||||||||||||| ||||||||||||||| |||||||||||||||    
T  15040736 atttcagtcatttactttgggaatgagcgaatccatttgggtaatgagcagaattc 15040681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 8 - 56
Target Start/End: Original strand, 53814591 - 53814639
Alignment:
Q  8 tcatttactttgggaattagcgaatccatttggataatgagcagaattc 56  Q
    ||||||||||||||||| ||||||||||||||| |||||||||||||||    
T  53814591 tcatttactttgggaatgagcgaatccatttgggtaatgagcagaattc 53814639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 35069469 - 35069525
Alignment:
Q  1 atttcggtcatttactttgggaattagcgaatccatttggataatgagcagaattca 57  Q
    |||||||||||||||||| | ||| | ||||||||||| ||||||||||||||||||    
T  35069469 atttcggtcatttactttagaaatgaacgaatccatttagataatgagcagaattca 35069525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 7665788 - 7665739
Alignment:
Q  1 atttcggtcatttactttgggaattagcgaatccatttggataatgagca 50  Q
    ||||||||||||||||||| |||| |||||||||||||||  ||||||||    
T  7665788 atttcggtcatttactttgcgaatgagcgaatccatttgggaaatgagca 7665739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 11 - 56
Target Start/End: Complemental strand, 44430463 - 44430418
Alignment:
Q  11 tttactttgggaattagcgaatccatttggataatgagcagaattc 56  Q
    |||||||||||||| ||| || ||||||||||||||||||||||||    
T  44430463 tttactttgggaatgagcaaaaccatttggataatgagcagaattc 44430418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 11 - 55
Target Start/End: Original strand, 13843626 - 13843670
Alignment:
Q  11 tttactttgggaattagcgaatccatttggataatgagcagaatt 55  Q
    |||||||||||||| |||||| |||||||| ||||||||||||||    
T  13843626 tttactttgggaatgagcgaaaccatttgggtaatgagcagaatt 13843670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 39645829 - 39645773
Alignment:
Q  1 atttcggtcatttactttgggaattagcgaatccatttggataatgagcagaattca 57  Q
    |||||| |||||||||||| |||| | ||||||||||| |||||||||| |||||||    
T  39645829 atttcgatcatttactttgcgaatgaacgaatccatttagataatgagcggaattca 39645773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 11 - 57
Target Start/End: Original strand, 6162715 - 6162761
Alignment:
Q  11 tttactttgggaattagcgaatccatttggataatgagcagaattca 57  Q
    |||||||||||||| |||| | |||||||| ||||||||||||||||    
T  6162715 tttactttgggaatgagcggaaccatttgggtaatgagcagaattca 6162761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 11 - 56
Target Start/End: Complemental strand, 4969920 - 4969875
Alignment:
Q  11 tttactttgggaattagcgaatccatttggataatgagcagaattc 56  Q
    |||||||||||||| |||| | |||||||| |||||||||||||||    
T  4969920 tttactttgggaatgagcggaaccatttgggtaatgagcagaattc 4969875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 53824345 - 53824290
Alignment:
Q  1 atttcggtcatttactttgggaattagcgaatccatttggataatgagcagaattca 57  Q
    ||||| |||||||||||||||||| ||| | ||||||||| |||| |||||||||||    
T  53824345 atttcagtcatttactttgggaatgagc-attccatttgggtaataagcagaattca 53824290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 28446553 - 28446609
Alignment:
Q  1 atttcggtcatttactttgggaattagcgaatccatttggataatgagcagaattca 57  Q
    ||||| |||||||||||||||||| ||||||||||||||| ||||||||| ||||||    
T  28446553 atttcagtcatttactttgggaatgagcgaatccatttgggtaatgagcaaaattca 28446609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 33617699 - 33617644
Alignment:
Q  1 atttcggtcatttactttgggaattagcgaatccatttggataatgagcagaattc 56  Q
    ||||||||||||||||||| |||| ||||||||||||||| ||||||||| |||||    
T  33617699 atttcggtcatttactttgagaatgagcgaatccatttgggtaatgagcataattc 33617644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 5602999 - 5602941
Alignment:
Q  1 atttcggtcatttactttgggaattagcgaatccatttggataatgagcagaattcaac 59  Q
    |||| ||||||||||||||||||| ||| ||||||||||| ||| ||||||||||||||    
T  5602999 attttggtcatttactttgggaatgagcaaatccatttgggtaaagagcagaattcaac 5602941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 50065533 - 50065477
Alignment:
Q  1 atttcggtcatttactttgggaattagcgaatccatttggataatgagcagaattca 57  Q
    |||||||||||||||||||||||| ||||| ||||||| | ||||||| ||||||||    
T  50065533 atttcggtcatttactttgggaatgagcgattccattttggtaatgagtagaattca 50065477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 28474847 - 28474792
Alignment:
Q  1 atttcggtcatttactttgggaattagcgaatccatttggataatgagcagaattc 56  Q
    ||||| |||||||| ||||||||| || |||||||||||| |||||||||||||||    
T  28474847 atttcagtcatttattttgggaatgagtgaatccatttgggtaatgagcagaattc 28474792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 33401463 - 33401408
Alignment:
Q  1 atttcggtcatttactttgggaattagcgaatccatttggataatgagcagaattc 56  Q
    ||||||||||||||||||| |||| ||||||||||||||  ||||||||| |||||    
T  33401463 atttcggtcatttactttgagaatgagcgaatccatttgactaatgagcaaaattc 33401408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 11 - 57
Target Start/End: Complemental strand, 11821205 - 11821159
Alignment:
Q  11 tttactttgggaattagcgaatccatttggataatgagcagaattca 57  Q
    |||||||||||||| | |||| |||||||||||||||||||||||||    
T  11821205 tttactttgggaatgaacgaaaccatttggataatgagcagaattca 11821159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 35563415 - 35563361
Alignment:
Q  1 atttcggtcatttactttgggaattagcgaatccatttggataatgagcagaattcaac 59  Q
    ||||| |||||||||||||||||| ||||||||||||    ||||||||||||||||||    
T  35563415 atttcagtcatttactttgggaatgagcgaatccatt----taatgagcagaattcaac 35563361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 28476005 - 28476060
Alignment:
Q  1 atttcggtcatttactttgggaattagcgaatccatttggataatgagcagaattc 56  Q
    |||||| |||||||||||| |||| |||| | |||||||| |||||||||||||||    
T  28476005 atttcgatcatttactttgagaatgagcggaaccatttgggtaatgagcagaattc 28476060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 9 - 56
Target Start/End: Original strand, 49033761 - 49033808
Alignment:
Q  9 catttactttgggaattagcgaatccatttggataatgagcagaattc 56  Q
    |||||||||||||||| |||| | ||||||| ||||||||||||||||    
T  49033761 catttactttgggaatgagcggaaccatttgaataatgagcagaattc 49033808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 9 - 58
Target Start/End: Complemental strand, 39650243 - 39650194
Alignment:
Q  9 catttactttgggaattagcgaatccatttggataatgagcagaattcaa 58  Q
    |||||||||| ||||| |||||| |||||| | |||||||||||||||||    
T  39650243 catttactttaggaatgagcgaaaccatttaggtaatgagcagaattcaa 39650194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University