View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20658_low_3 (Length: 385)
Name: NF20658_low_3
Description: NF20658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20658_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 354; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 16 - 369
Target Start/End: Complemental strand, 43708927 - 43708574
Alignment:
| Q |
16 |
atgaatgaaactgtagaaaaattcttatcattgtagtcagatgttgctgaagtatatgatgtcatagaatacaaatcatctgtctttgttgttctttgaa |
115 |
Q |
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| T |
43708927 |
atgaatgaaactgtagaaaaattcttatcattgtagtcagatgttgctgaagtatatgatgtcatagaatacaaatcatctgtctttgttgttctttgaa |
43708828 |
T |
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| Q |
116 |
gaccaatgcttgcatgggagaaaacatcttcaaaattcatattatcaatgttttctttttcagctaatctctcatgtgaggttgagggacctacatattc |
215 |
Q |
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| T |
43708827 |
gaccaatgcttgcatgggagaaaacatcttcaaaattcatattatcaatgttttctttttcagctaatctctcatgtgaggttgagggacctacatattc |
43708728 |
T |
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| Q |
216 |
cctcatgatttggctagaatctattgagttttgtttgtactttgccaattgtgagagttgtttctgttggctcatatgagttcgtctaccatttggagaa |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43708727 |
cctcatgatttggctagaatctattgagttttgtttgtactttgccaattgtgagagttgtttctgttggctcatatgagttcgtctaccatttggagaa |
43708628 |
T |
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| Q |
316 |
attaagtggtcaatcgctacacaaggtttccaatcaggaatcaatgttgtcaat |
369 |
Q |
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| T |
43708627 |
attaagtggtcaatcgctacacaaggtttccaatcaggaatcaatgttgtcaat |
43708574 |
T |
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