View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20658_low_8 (Length: 242)
Name: NF20658_low_8
Description: NF20658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20658_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 168; Significance: 4e-90; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 19 - 198
Target Start/End: Original strand, 42078122 - 42078300
Alignment:
| Q |
19 |
taatgtgtggcttggttttaggaacaaaataaacaaagtggcatagagagaggacacaaatttacacacgttgactaatttcatgcttcctaatgttgcc |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42078122 |
taatgtgtggcttggttttaggaacaaaataaacaaagtggcatagagagaggacacaaatttacacacgttgactaatttcatgcttcctaatgttgcc |
42078221 |
T |
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| Q |
119 |
attatttctcacaagtacaagccactaagccaaataattaggaggaaaacgtgtagttttaatttaaatgaccaagtcac |
198 |
Q |
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| T |
42078222 |
attatttctcacaagtac-agctactaagccaaataattaggaggaaaacgtgtagttttaatttaaatgaccaagtcac |
42078300 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 195 - 242
Target Start/End: Complemental strand, 42079314 - 42079267
Alignment:
| Q |
195 |
tcaccattatttagccaaggttcatcaagaataggaatacgagtacca |
242 |
Q |
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| T |
42079314 |
tcaccattatttagccaaggttcatcaagaataggaatacgagtacca |
42079267 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 108 - 163
Target Start/End: Original strand, 40842417 - 40842471
Alignment:
| Q |
108 |
ctaatgttgccattatttctcacaagtacaagccactaagccaaataattaggagg |
163 |
Q |
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| T |
40842417 |
ctaatgttgctattatttatctcaagtgca-gccactaagccaaataattaggagg |
40842471 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 160
Target Start/End: Original strand, 41959235 - 41959286
Alignment:
| Q |
108 |
ctaatgttgccattatttctcacaagtacaagccactaagccaaataattagg |
160 |
Q |
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| T |
41959235 |
ctaatgttgctattatttatctcaagttca-gccactaagccaaataattagg |
41959286 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 141; Significance: 5e-74; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 19 - 186
Target Start/End: Original strand, 41943691 - 41943858
Alignment:
| Q |
19 |
taatgtgtggcttggttttaggaacaaaataaacaaagtggcatagagagaggacacaaatttacacacgttgactaatttcatgcttcctaatgttgcc |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| ||||||||||||||||||| |
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| T |
41943691 |
taatgtgtggcttggttttaggaacaaaataaacaaagtggcatagagagaggacacaaatatacacatgttgactaattccatgcttcctaatgttgcc |
41943790 |
T |
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| Q |
119 |
attatttctcacaa-gtacaagccactaagccaaataattaggaggaaaacgtgtagttttaatttaaa |
186 |
Q |
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|||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41943791 |
attatttctcacaatgtac-agccactaagccaaataattaggaggaaaacgtgtagttttaatttaaa |
41943858 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 89 - 198
Target Start/End: Original strand, 10345395 - 10345502
Alignment:
| Q |
89 |
ttgactaatttcatgcttcctaatgttgccattatttctcacaagtacaagccactaagccaaataattaggaggaaaacgtgtagttttaatttaaatg |
188 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
10345395 |
ttgactaatgccatgcttcctaatgttgccattatttctcacaagtaca-gccactaagccaa-taattaggaggaaaacgtgtagttttaatttaaatg |
10345492 |
T |
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| Q |
189 |
accaagtcac |
198 |
Q |
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|| ||||||| |
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| T |
10345493 |
actaagtcac |
10345502 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 19 - 65
Target Start/End: Original strand, 10345310 - 10345356
Alignment:
| Q |
19 |
taatgtgtggcttggttttaggaacaaaataaacaaagtggcataga |
65 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10345310 |
taatgtgtggcttggttttaggaacaaaataaacaaagtggcataga |
10345356 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 108 - 163
Target Start/End: Complemental strand, 9992544 - 9992490
Alignment:
| Q |
108 |
ctaatgttgccattatttctcacaagtacaagccactaagccaaataattaggagg |
163 |
Q |
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|||||||||| |||||||||| ||||| || ||||||||||||||||||||||||| |
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| T |
9992544 |
ctaatgttgctattatttctctcaagtgca-gccactaagccaaataattaggagg |
9992490 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 47 - 91
Target Start/End: Original strand, 15996448 - 15996492
Alignment:
| Q |
47 |
ataaacaaagtggcatagagagaggacacaaatttacacacgttg |
91 |
Q |
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|||||||||||| |||||||||||||||||||| |||||| |||| |
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| T |
15996448 |
ataaacaaagtgacatagagagaggacacaaatatacacatgttg |
15996492 |
T |
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