View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20659_low_1 (Length: 468)

Name: NF20659_low_1
Description: NF20659
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20659_low_1
NF20659_low_1
[»] chr7 (1 HSPs)
chr7 (1-451)||(5847371-5847822)
[»] chr6 (2 HSPs)
chr6 (22-106)||(13247400-13247484)
chr6 (42-95)||(32152934-32152987)
[»] chr4 (4 HSPs)
chr4 (202-282)||(26551319-26551399)
chr4 (1-147)||(4401867-4402015)
chr4 (195-301)||(14004030-14004137)
chr4 (204-272)||(28107799-28107867)
[»] chr5 (2 HSPs)
chr5 (191-285)||(35170568-35170662)
chr5 (40-120)||(33542455-33542535)
[»] chr2 (1 HSPs)
chr2 (202-268)||(20688652-20688718)
[»] chr8 (1 HSPs)
chr8 (40-101)||(8136341-8136402)
[»] chr3 (1 HSPs)
chr3 (40-120)||(1300853-1300934)
[»] chr1 (2 HSPs)
chr1 (60-105)||(14790791-14790836)
chr1 (18-107)||(17598437-17598526)


Alignment Details
Target: chr7 (Bit Score: 388; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 1 - 451
Target Start/End: Original strand, 5847371 - 5847822
Alignment:
Q  1 aaagaacaaactaagagattgctcctaagcacatgattcgattaagccaccaataatggtaatcaaaaacaaaagtagtgtatttcgctttcaacaacca 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  5847371 aaagaacaaactaagagattgctcctaagcacatgattcgattaagccaccaataatggtaatcaaaagcaaaagtagtgtatttcgctttcaacaacca 5847470  T
Q  101 aaatgttgaagctttattttttcaaacaattgatctaaagaatgctcatttacttaaatattcgatcattcctttccttccaaatcacagaaacacatga 200  Q
    |||||||||||||| |||||||||||||||  ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  5847471 aaatgttgaagcttgattttttcaaacaatatatctaaagaatgctcatttacttaaatattcgatcattcttttccttccaaatcacagaaacacatga 5847570  T
Q  201 gagccataaaatatgcattgttgatcgatgattctttgttgatcctcctaattgaccaaattgaagtaaatgttctaaaatgtgagttgggttcactgtg 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  5847571 gagccataaaatatgcattgttgatcgatgattctttgttgatcctcctaattgaccaaattgaagtaaatgttctaaaatgtgagttgggttcactatg 5847670  T
Q  301 atgatcaaacatatccattgcgagaccaaagtctaaattgtac-nnnnnnnnttgcatcgcataaacaaatggttgacatcttcattagtacaacaacca 399  Q
    |||||||||||||||||||| ||||||||||||||||||||||         ||||||||||||||||||||||||||||||||||||||||||||||||    
T  5847671 atgatcaaacatatccattgtgagaccaaagtctaaattgtacaaaaaaaaattgcatcgcataaacaaatggttgacatcttcattagtacaacaacca 5847770  T
Q  400 cccatacagagctgctagtgattctgaagaagaccccaccgagaaaggttat 451  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  5847771 cccacacagagctgctagtgattctgaagaagaccccaccgagaaaggttat 5847822  T

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Target: chr6 (Bit Score: 49; Significance: 8e-19; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 22 - 106
Target Start/End: Original strand, 13247400 - 13247484
Alignment:
Q  22 ctcctaagcacatgattcgattaagccaccaataatggtaatcaaaaacaaaagtagtgtatttcgctttcaacaaccaaaatgt 106  Q
    ||||||||||||| ||||| |||||||||||| ||||||||||||||   | ||||||||||| |||||||||| ||||||||||    
T  13247400 ctcctaagcacataattcgtttaagccaccaagaatggtaatcaaaatagatagtagtgtattccgctttcaaccaccaaaatgt 13247484  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 42 - 95
Target Start/End: Original strand, 32152934 - 32152987
Alignment:
Q  42 ttaagccaccaataatggtaatcaaaaacaaaagtagtgtatttcgctttcaac 95  Q
    ||||||||| || ||||||| |||||||||||||||| |||||| |||||||||    
T  32152934 ttaagccactaagaatggtattcaaaaacaaaagtagcgtattttgctttcaac 32152987  T

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Target: chr4 (Bit Score: 49; Significance: 8e-19; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 202 - 282
Target Start/End: Original strand, 26551319 - 26551399
Alignment:
Q  202 agccataaaatatgcattgttgatcgatgattctttgttgatcctcctaattgaccaaattgaagtaaatgttctaaaatg 282  Q
    |||||||||| |||||| ||||| ||||||| ||||| |||||||||||| |||||||||||||||||||| ||| |||||    
T  26551319 agccataaaagatgcatagttgaccgatgatgctttgatgatcctcctaaatgaccaaattgaagtaaatggtctgaaatg 26551399  T

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Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 147
Target Start/End: Original strand, 4401867 - 4402015
Alignment:
Q  1 aaagaacaaactaagagattgctcctaagcacatgattcgattaa-gccaccaataatggtaatcaaaaacaaaagtagtgtatttcgctttcaacaacc 99  Q
    |||||||| | ||||||||||||  |||||||||| |  |||||| |||||||| || | |||||||||  ||||||||| ||||||| ||||||| |||    
T  4401867 aaagaacatattaagagattgctattaagcacatggtcggattaaagccaccaaaaacgataatcaaaagtaaaagtagtttatttcgttttcaactacc 4401966  T
Q  100 aaaatg-ttgaagctttattttttcaaacaattgatctaaagaatgctc 147  Q
    |||||| |||||| || |||||||||| || ||| | |||||| |||||    
T  4401967 aaaatgtttgaaggttaattttttcaagcagttggtttaaagagtgctc 4402015  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 195 - 301
Target Start/End: Complemental strand, 14004137 - 14004030
Alignment:
Q  195 acatgagagccataaaatatgcattgttgatcgatgattctttgttgatcctcctaattgaccaaattgaagtaaatg-ttctaaaatgtgagttgggtt 293  Q
    ||||||||||||||||| ||| |||||||||||||||||||||    |||||| ||| |||||| | |||| |||||| | | ||||||||||| || ||    
T  14004137 acatgagagccataaaaaatgaattgttgatcgatgattctttacaaatcctcttaaatgaccataatgaaataaatgatcccaaaatgtgagtcggatt 14004038  T
Q  294 cactgtga 301  Q
    ||| ||||    
T  14004037 caccgtga 14004030  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 204 - 272
Target Start/End: Original strand, 28107799 - 28107867
Alignment:
Q  204 ccataaaatatgcattgttgatcgatgattctttgttgatcctcctaattgaccaaattgaagtaaatg 272  Q
    ||||| || |||||| |||||  |||||| ||||| |||||||| ||| |||||||||||| |||||||    
T  28107799 ccatataagatgcatagttgaatgatgatactttgatgatcctcttaaatgaccaaattgatgtaaatg 28107867  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 191 - 285
Target Start/End: Original strand, 35170568 - 35170662
Alignment:
Q  191 aaacacatgagagccataaaatatgcattgttgatcgatgattctttgttgatcctcctaattgaccaaattgaagtaaatgttctaaaatgtga 285  Q
    |||||||| ||||||||| || |||||||| |||||| |||||| ||||  |||||||||| | |||||||||||| ||||| ||| ||||||||    
T  35170568 aaacacataagagccatacaagatgcattgatgatcggtgattccttgtgaatcctcctaaattaccaaattgaagcaaatgatctgaaatgtga 35170662  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 40 - 120
Target Start/End: Complemental strand, 33542535 - 33542455
Alignment:
Q  40 gattaagccaccaataatggtaatcaaaaacaaaagtagtgtatttcgctttcaacaaccaaaatgttgaagctttatttt 120  Q
    ||||||||||| || ||||||||| ||||   ||||||| ||| ||| |||||||| || |||| |||||||||| |||||    
T  33542535 gattaagccactaagaatggtaattaaaagagaaagtagcgtagttcactttcaaccactaaaacgttgaagcttaatttt 33542455  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 202 - 268
Target Start/End: Original strand, 20688652 - 20688718
Alignment:
Q  202 agccataaaatatgcattgttgatcgatgattctttgttgatcctcctaattgaccaaattgaagta 268  Q
    ||||||||||||||||| | | | ||||||| ||||| |||||||||||| ||||| ||||||||||    
T  20688652 agccataaaatatgcatagctaaccgatgatgctttgatgatcctcctaaatgaccgaattgaagta 20688718  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 40 - 101
Target Start/End: Complemental strand, 8136402 - 8136341
Alignment:
Q  40 gattaagccaccaataatggtaatcaaaaacaaaagtagtgtatttcgctttcaacaaccaa 101  Q
    ||||||||||||| ||||||||||| ||||  ||||||| | |||||||||||||| |||||    
T  8136402 gattaagccaccagtaatggtaatcgaaaatgaaagtagcgcatttcgctttcaaccaccaa 8136341  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 40 - 120
Target Start/End: Complemental strand, 1300934 - 1300853
Alignment:
Q  40 gattaagccaccaataatggtaatcaaaaacaaaagtagtgtatttcgctttcaacaaccaaaatg-ttgaagctttatttt 120  Q
    |||||||||||||| ||||||||||||||   ||||||| ||| ||  |||||||| ||||||| | ||||||||| |||||    
T  1300934 gattaagccaccaagaatggtaatcaaaagagaaagtagagtactttactttcaaccaccaaaaagtttgaagcttaatttt 1300853  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 60 - 105
Target Start/End: Original strand, 14790791 - 14790836
Alignment:
Q  60 taatcaaaaacaaaagtagtgtatttcgctttcaacaaccaaaatg 105  Q
    ||||||||| ||||| |||||||||||| ||||||| |||||||||    
T  14790791 taatcaaaatcaaaattagtgtatttcgatttcaaccaccaaaatg 14790836  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 107
Target Start/End: Complemental strand, 17598526 - 17598437
Alignment:
Q  18 attgctcctaagcacatgattcgattaagccaccaataatggtaatcaaaaacaaaagtagtgtatttcgctttcaacaaccaaaatgtt 107  Q
    |||||||| ||| |||  ||| |||||||||| ||| ||||||  ||||||  ||||||||  ||||||||||||||| || ||||||||    
T  17598526 attgctcccaagtacaaaattggattaagccatcaaaaatggttgtcaaaagtaaaagtagaatatttcgctttcaaccacgaaaatgtt 17598437  T

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