View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20659_low_2 (Length: 349)
Name: NF20659_low_2
Description: NF20659
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20659_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 121; Significance: 6e-62; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 190 - 314
Target Start/End: Complemental strand, 33095116 - 33094992
Alignment:
| Q |
190 |
ttaggagttgaggctctttggatgagattattgagttgaaaaacaattgtagactccttagatgagtgaaaatcatcaagtatcttattcaagggtcaga |
289 |
Q |
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| T |
33095116 |
ttaggagttgaggctctttggatgagattattgagttgaaaaacaattgtagactccttagatgagtgaaaatcatcaagtatcttattcaagggtcaga |
33095017 |
T |
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| Q |
290 |
aaattggtagaaataattaagtata |
314 |
Q |
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| T |
33095016 |
aaattggtagaaataattaggtata |
33094992 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 172 - 275
Target Start/End: Original strand, 52065488 - 52065591
Alignment:
| Q |
172 |
ttttagagaacttagagcttaggagttgaggctctttggatgagattattgagttgaaaaacaattgtagactccttagatgagtgaaaatcatcaagta |
271 |
Q |
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| T |
52065488 |
ttttagggaacttagaggttaaaagttgagggtcttttgatgagattcttgggttgggaaacaattgtgaaccccttgggtgagtgaaaatcatcgagtc |
52065587 |
T |
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| Q |
272 |
tctt |
275 |
Q |
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|||| |
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| T |
52065588 |
tctt |
52065591 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 172 - 265
Target Start/End: Original strand, 3677353 - 3677446
Alignment:
| Q |
172 |
ttttagagaacttagagcttaggagttgaggctctttggatgagattattgagttgaaaaacaattgtagactccttagatgagtgaaaatcat |
265 |
Q |
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| T |
3677353 |
ttttagaaaacttagaggctaaaagttgagggtctttggatgagatttctgagttgggaaacaattataaacaccttgtatgagagaaaatcat |
3677446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 207 - 275
Target Start/End: Complemental strand, 32576540 - 32576472
Alignment:
| Q |
207 |
ttggatgagattattgagttgaaaaacaattgtagactccttagatgagtgaaaatcatcaagtatctt |
275 |
Q |
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| T |
32576540 |
ttgggtgagattcttgggttgggaaacaattgtaaacacctaagatgagtgaaaatcattaagtctctt |
32576472 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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