View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2065_high_2 (Length: 316)
Name: NF2065_high_2
Description: NF2065
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2065_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 174; Significance: 1e-93; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 38 - 243
Target Start/End: Original strand, 26930496 - 26930701
Alignment:
| Q |
38 |
cttttaaggatcaaactagagatttacacatacaccatatataatattgccacttatagttatatctaacaaatataattaaacaacatgaaaccttctt |
137 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |
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| T |
26930496 |
cttttaaggatcaaagtagagatttacacatacaccatatataatattgccacttataattatatctaacaaatataattaaacaacaggaaaccttctt |
26930595 |
T |
|
| Q |
138 |
tttactaaaccacgatgctaactatttaaaacccacattatatgatagtcaatatcttttaaattcgtcctaagttattctaaacttcataataactgta |
237 |
Q |
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|||||||||||| | |||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | |
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| T |
26930596 |
tttactaaaccatgctgctaactatttaaaacctacattatatgatagtcaatatcttttaaatttgtcctaagttattctaaacttcataataactgaa |
26930695 |
T |
|
| Q |
238 |
gtagtg |
243 |
Q |
| |
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|||||| |
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| T |
26930696 |
gtagtg |
26930701 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 37 - 192
Target Start/End: Original strand, 26963423 - 26963578
Alignment:
| Q |
37 |
tcttttaaggatcaaactagagatttacacatacaccatatataatattgccacttatagttatatctaacaaatataattaaacaacatgaaaccttct |
136 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| ||||||| |
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| T |
26963423 |
tcttttaaggatcaaactagagatttaaacatacaccatatatactattgccacttatagttataactaacaaatataattaaacaacatggaaccttcc |
26963522 |
T |
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| Q |
137 |
ttttactaaaccacgatgctaactatttaaaacccacattatatgatagtcaatat |
192 |
Q |
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|||||| |||||| | ||||||| |||||||| ||||||||||||||||||||||| |
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| T |
26963523 |
ttttaccaaaccatgttgctaaccatttaaaatccacattatatgatagtcaatat |
26963578 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 37 - 192
Target Start/End: Complemental strand, 26940631 - 26940475
Alignment:
| Q |
37 |
tcttttaaggatcaaactagagatttaca-catacaccatatataatattgccacttatagttatatctaacaaatataattaaacaacatgaaaccttc |
135 |
Q |
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||||||||||||||||| ||||||| || |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||| |
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| T |
26940631 |
tcttttaaggatcaaacaggagattttcaacatacaccatatataatattgccacttatagttataactaacaaatataattaaacaacatggaaccttc |
26940532 |
T |
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| Q |
136 |
tttttactaaaccacgatgctaactatttaaaacccacattatatgatagtcaatat |
192 |
Q |
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|||||| |||||| | ||||||| |||||||| ||||||||||||||||||||||| |
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| T |
26940531 |
cttttaccaaaccatgttgctaaccatttaaaatccacattatatgatagtcaatat |
26940475 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 262 - 308
Target Start/End: Original strand, 26930722 - 26930768
Alignment:
| Q |
262 |
gtaacatttcaaatacctgaaagggtgttttatgtctgattcatctc |
308 |
Q |
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||||||||||||||||||| ||||||||||||||||||||| ||||| |
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| T |
26930722 |
gtaacatttcaaatacctgtaagggtgttttatgtctgattgatctc |
26930768 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 126; Significance: 6e-65; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 38 - 235
Target Start/End: Original strand, 36673396 - 36673593
Alignment:
| Q |
38 |
cttttaaggatcaaactagagatttacacatacaccatatataatattgccacttatagttatatctaacaaatataattaaacaacatgaaaccttctt |
137 |
Q |
| |
|
||||||||||||||| | ||||||||||| ||||||||||||||||||||||| |||| ||||| ||||||||||||||||||| ||| ||||||||| |
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| T |
36673396 |
cttttaaggatcaaattggagatttacacgtacaccatatataatattgccacctatatttatagctaacaaatataattaaactacaagaaaccttcca |
36673495 |
T |
|
| Q |
138 |
tttactaaaccacgatgctaactatttaaaacccacattatatgatagtcaatatcttttaaattcgtcctaagttattctaaacttcataataactg |
235 |
Q |
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|||||||||||| | ||||||| |||||||||||||||||||||||| |||||||||||||||||| | | |||||||||||||||||||||||||| |
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| T |
36673496 |
tttactaaaccatgctgctaaccatttaaaacccacattatatgataatcaatatcttttaaattcataccgagttattctaaacttcataataactg |
36673593 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 37 - 232
Target Start/End: Original strand, 29414024 - 29414219
Alignment:
| Q |
37 |
tcttttaaggatcaaactagagatttacacatacaccatatataatattgccacttatagttatatctaacaaatataattaaacaacatgaaaccttct |
136 |
Q |
| |
|
||||| |||||||||| | |||||||||||||||||||||||||||| | || |||||| ||||| |||| |||||||||||||||| | ||||||||| |
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| T |
29414024 |
tctttgaaggatcaaattggagatttacacatacaccatatataatactaccgcttataattataactaagaaatataattaaacaaaaggaaaccttcc |
29414123 |
T |
|
| Q |
137 |
ttttactaaaccacgatgctaactatttaaaacccacattatatgatagtcaatatcttttaaattcgtcctaagttattctaaacttcataataa |
232 |
Q |
| |
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||||| |||| | | |||| || ||| |||||||| ||| ||||||| |||| ||||||||||||| | || ||||||| ||||||| ||||||| |
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| T |
29414124 |
ttttaataaaaaatgctgcttaccattcaaaacccaaattttatgataatcaagatcttttaaattcctactgagttattataaacttaataataa |
29414219 |
T |
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