View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2065_low_1 (Length: 437)
Name: NF2065_low_1
Description: NF2065
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2065_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 1 - 417
Target Start/End: Complemental strand, 3574613 - 3574184
Alignment:
| Q |
1 |
agtagagttaaaagataatactttttgtaataaaaattggaagattgataacaaccatattaaatgttacctcaatcactaaataatggacctccccgcc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
3574613 |
agtagagttaaaagataatactttttgtaataaaaattggaagattgataacaaccatattaaatgttacctcaatcactaaataatggacctccc-gcg |
3574515 |
T |
|
| Q |
101 |
gaaattataaaaattaagaaagttggtaaccttgtcnnnnnnnnnnn-------gttggtaataataataattttgtaaacaattaatttgtattgtttt |
193 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3574514 |
gaaattataaaaattaagaaagttggtaaccttgtcaaaaaaaaaaaaaaaaaagttggtaataataataattttgtaaacaattaatttgtattgtttt |
3574415 |
T |
|
| Q |
194 |
ccaagtttgttaatttaccttcaaatcatatatagtacttgttgttgataattgatgcattttaaaatttgaaatggttgatgctataaaaatagacnnn |
293 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
3574414 |
ccaagtttgttaatttaccttcaaatcatatatagtacttgttgttgataattgatgcattttaaaatttgaaatggttgatcctataaaaatagacaaa |
3574315 |
T |
|
| Q |
294 |
nnnnttctccagaaataaagatgaaggtattattgttactaaatttattgatcattgag-------tannnnnnnnataccaattctcagatttataaac |
386 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| ||||||||||||| |
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| T |
3574314 |
aaaattctccagaaataaagatgaaggtattattgttactaaatttattgatcattgagtttttttttttttttttataccaattcgcagatttataaac |
3574215 |
T |
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| Q |
387 |
aaaagaaatacttgaaaatagttgcgaggac |
417 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
3574214 |
aaaagaaatacttgaaaatagttgcgaggac |
3574184 |
T |
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