View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2065_low_16 (Length: 203)

Name: NF2065_low_16
Description: NF2065
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2065_low_16
NF2065_low_16
[»] chr1 (2 HSPs)
chr1 (105-187)||(48658865-48658947)
chr1 (16-65)||(48626155-48626204)
[»] chr8 (1 HSPs)
chr8 (98-187)||(18545148-18545237)


Alignment Details
Target: chr1 (Bit Score: 79; Significance: 4e-37; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 105 - 187
Target Start/End: Complemental strand, 48658947 - 48658865
Alignment:
Q  105 agcaacaacactaaccattcaagagtaaagtggtcataaagtaatgggatagaaataaaaatgtaataacaaatccatagtaa 187  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  48658947 agcaacaacactaaccattcaagagtaaagtggccataaagtaatgggatagaaataaaaatgtaataacaaatccatagtaa 48658865  T

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Target: chr1; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 16 - 65
Target Start/End: Complemental strand, 48626204 - 48626155
Alignment:
Q  16 ataagcactgctgatagtggaatatatttaccaagagtatttttaggtaa 65  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  48626204 ataagcactgctgatagtggaatatatttaccaagagtatttttatgtaa 48626155  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 98 - 187
Target Start/End: Original strand, 18545148 - 18545237
Alignment:
Q  98 acgaaacagcaacaacactaaccattcaagagtaaagtggtcataaagtaatgggatagaaataaaaatgtaataacaaatccatagtaa 187  Q
    |||||||| |||||||||| |||||||||| |||||||||  |||||| ||||  || |   ||||||||||||  ||||| ||||||||    
T  18545148 acgaaacaccaacaacacttaccattcaagggtaaagtggaaataaagaaatgatatgggggtaaaaatgtaatggcaaattcatagtaa 18545237  T

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