View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2065_low_3 (Length: 387)
Name: NF2065_low_3
Description: NF2065
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2065_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 15 - 380
Target Start/End: Original strand, 11321363 - 11321726
Alignment:
| Q |
15 |
tcaattataaggcagagcaaaatcgtgaaatctcttaaacatatacgatttcaagcagattttttgtagtttaggattctactaagcattcaaatcggta |
114 |
Q |
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| T |
11321363 |
tcaattataaggcagagcaaaatcgtgaaatctcttaaacatatacgattttgagcagattttgtgtagtttaggattctactaagcatttaaatcggta |
11321462 |
T |
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| Q |
115 |
aggcagaacaaaatcg--------tagaattttaggattctaatcgggattttaacaactatgaacataatacttttcaacaaaacatattaattccaac |
206 |
Q |
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| T |
11321463 |
aggcagagcaaaatcgcaaaatggtagaattttaggattcaattcgggattttaacaactatgaacataatacttttcaacaaa-catattaattccaac |
11321561 |
T |
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| Q |
207 |
tgaactttctgtgcacattatagagaagaaagaatccaacatctatatcacggttttatcaattgtatcacacaattggtcaataccaaaactggttaca |
306 |
Q |
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| T |
11321562 |
tgaactttctgtgcacattatagagaagaaagaatccaacatctatatcacggttttatcaattgtattgcacaattgatcgataccaaaactggttaca |
11321661 |
T |
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| Q |
307 |
ggtacgatagccgctgagagggc-gagtttggccatttcttcgggaaagactctcttaaccgcagccttcatctc |
380 |
Q |
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| T |
11321662 |
ggt----------tggagagggctgagtttagccatttcttcgggaaagactcccttaacggcagcattcatctc |
11321726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 51 - 165
Target Start/End: Original strand, 9720400 - 9720514
Alignment:
| Q |
51 |
aaacatatacgatttcaagcagattttttgtagtttaggattctactaagcattcaaatcggtaaggcagaacaaaatcgtagaattttaggattctaat |
150 |
Q |
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| T |
9720400 |
aaacatagatgacttcaaacggatttttcatagtttaggattctactaaattttcagatcggtaaggcagagaaaaatcgtaggatttcagtattctgat |
9720499 |
T |
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| Q |
151 |
cgggattttaacaac |
165 |
Q |
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| T |
9720500 |
cgggattgtaacaac |
9720514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 81 - 129
Target Start/End: Original strand, 27676992 - 27677040
Alignment:
| Q |
81 |
tagtttaggattctactaagcattcaaatcggtaaggcagaacaaaatc |
129 |
Q |
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| T |
27676992 |
tagtttaggattctactcaggattctgatcggtaaggcagagcaaaatc |
27677040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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