View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2065_low_4 (Length: 337)
Name: NF2065_low_4
Description: NF2065
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2065_low_4 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 308; Significance: 1e-173; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 1 - 320
Target Start/End: Complemental strand, 49686374 - 49686055
Alignment:
| Q |
1 |
ccatttcctttactagttaagacaagtagcggtaacacagtcaaatgagagaacaaaagatgtagtgcatgaactagagccatcctattctgtttcacaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49686374 |
ccatttcctttactagttaagacaagtagcagtaacacagtcaaatgagagaacaaaagatgtagtgcatgaactagagccatcctattctgtttcacaa |
49686275 |
T |
|
| Q |
101 |
tttgttccacacttgttaatttgcacaacataaatatatcctttgaagccaattgacacgctatagttgacttggaaaattactacacaagtcatgtgaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49686274 |
tttgttccacacttgttaatttgcacaacataaatatatcctttgaagccaattgacacgctatagttgacttggaaaattactacacaagtcatgtgaa |
49686175 |
T |
|
| Q |
201 |
tttgtgtctatcacggactacaatgattttctatcatttatttgttttgaaattgaaactcactttttgctaaattctctgatactgattctctagaaaa |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49686174 |
tttgtgtctatcacggactacaatgattttctatcatttatttgttttgaaattgaaacccaatttttgctaaattctctgatactgattctctagaaaa |
49686075 |
T |
|
| Q |
301 |
gtaaaacatgtactccttat |
320 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
49686074 |
gtaaaacatgtactccttat |
49686055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 1 - 205
Target Start/End: Complemental strand, 49690634 - 49690421
Alignment:
| Q |
1 |
ccatttcctttactagttaagacaagtagcggtaacacagtcaaatgagagaacaaaag---------atgtagtgcatgaactagagccatcctattct |
91 |
Q |
| |
|
||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||| ||||| ||| ||||| |||||| | ||| | |
|
|
| T |
49690634 |
ccatttcctttcctagttaagacaagtagcagtaacacagtcaaatgagagaacaaaaggaacctaaaatgtaaaacataaactaaagccattcaattgt |
49690535 |
T |
|
| Q |
92 |
gtttcacaatttgttccacacttgttaatttgcacaacataaatatatcctttgaagccaattgacacgctatagttgacttggaaaat---tactacac |
188 |
Q |
| |
|
||| |||||||||||||||||| ||||||||||| |||||||||||| ||||||||| ||||||||||| ||||||||||||||||| ||| |||| |
|
|
| T |
49690534 |
gttaaacaatttgttccacactt-ttaatttgcacgacataaatatattctttgaagcaaattgacacgc--tagttgacttggaaaatgagtaccacac |
49690438 |
T |
|
| Q |
189 |
aagtcatgtgaatttgt |
205 |
Q |
| |
|
||||| ||| ||||||| |
|
|
| T |
49690437 |
aagtcttgtaaatttgt |
49690421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 49679007 - 49678948
Alignment:
| Q |
1 |
ccatttcctttactagttaagacaagtagcggtaacacagtcaaatgagagaacaaaaga |
60 |
Q |
| |
|
||||||||||| |||||||||||||||||| |||||||| | |||||||||||||||||| |
|
|
| T |
49679007 |
ccatttcctttcctagttaagacaagtagcagtaacacaattaaatgagagaacaaaaga |
49678948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 235 - 294
Target Start/End: Complemental strand, 49690378 - 49690319
Alignment:
| Q |
235 |
catttatttgttttgaaattgaaactcactttttgctaaattctctgatactgattctct |
294 |
Q |
| |
|
||||||||| |||||||||||||| ||||| ||||||||||||||| || | ||||||| |
|
|
| T |
49690378 |
catttatttcttttgaaattgaaatccacttcttgctaaattctctgctaataattctct |
49690319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University