View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2065_low_6 (Length: 310)

Name: NF2065_low_6
Description: NF2065
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2065_low_6
NF2065_low_6
[»] chr2 (3 HSPs)
chr2 (164-294)||(35974104-35974234)
chr2 (11-100)||(35973947-35974043)
chr2 (13-57)||(31026704-31026748)
[»] chr6 (3 HSPs)
chr6 (15-57)||(15443704-15443746)
chr6 (10-48)||(8931605-8931643)
chr6 (10-52)||(12627819-12627861)
[»] chr5 (1 HSPs)
chr5 (13-57)||(22423818-22423862)
[»] chr3 (2 HSPs)
chr3 (13-57)||(7614421-7614465)
chr3 (15-57)||(21419463-21419505)
[»] chr8 (1 HSPs)
chr8 (14-57)||(8798838-8798881)
[»] chr7 (3 HSPs)
chr7 (13-57)||(5835256-5835300)
chr7 (13-57)||(24146825-24146869)
chr7 (24-52)||(36813197-36813225)


Alignment Details
Target: chr2 (Bit Score: 119; Significance: 8e-61; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 164 - 294
Target Start/End: Original strand, 35974104 - 35974234
Alignment:
Q  164 tgatgtgtaggtttgaatagagaggagaaactagtgaaacttggatcaagaaacttctttctgtgtcctaaaaatactgcacacgcaggggagggtattt 263  Q
    ||||| ||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35974104 tgatgcgtaggtttgaacagggaggagaaactagtgaaacttggatcaagaaacttctttctgtgtcctaaaaatactgcacacgcaggggagggtattt 35974203  T
Q  264 ctggaaatagaaatgatggtagcgtaacgac 294  Q
    |||||||||||||||||||||||||||||||    
T  35974204 ctggaaatagaaatgatggtagcgtaacgac 35974234  T

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Target: chr2; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 11 - 100
Target Start/End: Original strand, 35973947 - 35974043
Alignment:
Q  11 atcgacatatataattatattgaattatgttattttcttaaactattttc-------ccttatatgagtttgtgcttcgtagtttataatcatagaa 100  Q
    |||||||||||||||||||||||||||||||||||||||||||  |||||       ||||||||||||||||||||||||||||||||||||||||    
T  35973947 atcgacatatataattatattgaattatgttattttcttaaaccgttttcgtgtcgtccttatatgagtttgtgcttcgtagtttataatcatagaa 35974043  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 57
Target Start/End: Complemental strand, 31026748 - 31026704
Alignment:
Q  13 cgacatatataattatattgaattatgttattttcttaaactatt 57  Q
    |||||||||| |||| |||||||||||| ||||||||||| ||||    
T  31026748 cgacatatatgattacattgaattatgtcattttcttaaattatt 31026704  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 57
Target Start/End: Complemental strand, 15443746 - 15443704
Alignment:
Q  15 acatatataattatattgaattatgttattttcttaaactatt 57  Q
    |||||||||||||||||||||||||||||||||| ||| ||||    
T  15443746 acatatataattatattgaattatgttattttctcaaattatt 15443704  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 10 - 48
Target Start/End: Original strand, 8931605 - 8931643
Alignment:
Q  10 catcgacatatataattatattgaattatgttattttct 48  Q
    |||||||| ||||||||||| ||||||||||||||||||    
T  8931605 catcgacacatataattatactgaattatgttattttct 8931643  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 10 - 52
Target Start/End: Original strand, 12627819 - 12627861
Alignment:
Q  10 catcgacatatataattatattgaattatgttattttcttaaa 52  Q
    ||||||||||||| |||| |||||| |||||||||||||||||    
T  12627819 catcgacatatatgattacattgaaatatgttattttcttaaa 12627861  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 57
Target Start/End: Original strand, 22423818 - 22423862
Alignment:
Q  13 cgacatatataattatattgaattatgttattttcttaaactatt 57  Q
    |||||||||||||||||||||||||||| ||||||| ||| ||||    
T  22423818 cgacatatataattatattgaattatgtgattttctcaaattatt 22423862  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 57
Target Start/End: Original strand, 7614421 - 7614465
Alignment:
Q  13 cgacatatataattatattgaattatgttattttcttaaactatt 57  Q
    ||||||||||||||||| |||||||||| ||||||||||| ||||    
T  7614421 cgacatatataattatactgaattatgtgattttcttaaattatt 7614465  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 57
Target Start/End: Original strand, 21419463 - 21419505
Alignment:
Q  15 acatatataattatattgaattatgttattttcttaaactatt 57  Q
    ||||||||||||| |||||||||| ||||||||||||| ||||    
T  21419463 acatatataattacattgaattatattattttcttaaattatt 21419505  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 14 - 57
Target Start/End: Original strand, 8798838 - 8798881
Alignment:
Q  14 gacatatataattatattgaattatgttattttcttaaactatt 57  Q
    |||| |||||||||||||||||||||||||||||| ||| ||||    
T  8798838 gacacatataattatattgaattatgttattttctcaaattatt 8798881  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 57
Target Start/End: Complemental strand, 5835300 - 5835256
Alignment:
Q  13 cgacatatataattatattgaattatgttattttcttaaactatt 57  Q
    ||||| ||||||||| | |||||||||||||||||| ||||||||    
T  5835300 cgacacatataattacactgaattatgttattttctcaaactatt 5835256  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 57
Target Start/End: Complemental strand, 24146869 - 24146825
Alignment:
Q  13 cgacatatataattatattgaattatgttattttcttaaactatt 57  Q
    ||||| |||||||||||||||||||||| ||||||| ||| ||||    
T  24146869 cgacacatataattatattgaattatgtgattttctaaaattatt 24146825  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 52
Target Start/End: Original strand, 36813197 - 36813225
Alignment:
Q  24 attatattgaattatgttattttcttaaa 52  Q
    |||||||||||||||||||||||||||||    
T  36813197 attatattgaattatgttattttcttaaa 36813225  T

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