View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20660_high_8 (Length: 343)
Name: NF20660_high_8
Description: NF20660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20660_high_8 |
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Alignment Details
Target: chr2 (Bit Score: 259; Significance: 1e-144; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 19 - 332
Target Start/End: Complemental strand, 36157308 - 36156982
Alignment:
| Q |
19 |
atgtccatgatagggcatagctgcatgaactcttttaggtctttaaaatgcatcttagatgctaactgcatgaaagggaaacaattcttgagtttccaaa |
118 |
Q |
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| T |
36157308 |
atgtccatgatagggcgtagctgcatgaactcttttagctctttaaaatgcatcttagatactaactgcatgaaaaggaaacaattcttgagtttccaaa |
36157209 |
T |
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| Q |
119 |
gcatgtatgatatattaatatgtttgattactttgatcaatttgcagatggagcggaggattatcagacttgagagatcaaactcttcagactagaattc |
218 |
Q |
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| T |
36157208 |
gcatgtatgatatattaatatgtttgattactttgatcaatttgcagatggagcggaggattatcagacttgagagatcaaactcttcagactagaattc |
36157109 |
T |
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| Q |
219 |
atttgtgtgttgaattttccatcagttggataagaattatgttttcggataatgtgtt-------------gtttgtattatgttttcgaataatttgtt |
305 |
Q |
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| T |
36157108 |
atttgtgtgttgaattttccatcagttggataagaatcatgttttcggataatgtgttgttttgaactgttgtttgtattatgttttcgaataatttgtt |
36157009 |
T |
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| Q |
306 |
gtttcgagccattgtttgttaatgatg |
332 |
Q |
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| T |
36157008 |
gtttcgagcctttgtttgttaatgatg |
36156982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 19 - 251
Target Start/End: Complemental strand, 36152383 - 36152152
Alignment:
| Q |
19 |
atgtccatgatagggcatagctgcatgaactcttttaggtctttaaaatgcatcttagatgctaactgcatgaaagggaaacaattcttgagtttccaaa |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| |
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| T |
36152383 |
atgtccatgatagggcatagctgcatgaactcttttagctctttaaaatgcatcttagatactaactgcatgaaggggaaacaattcttgagtttccaaa |
36152284 |
T |
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| Q |
119 |
gcatgtatgatatattaatatgtttgattactttgatcaatttgcagatggagcggaggattatcagacttgagagatcaaactcttcagactagaattc |
218 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| ||||||||| |||||| || |
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| T |
36152283 |
gca--tatgatatattaatatgtttgattactttgatcaatttgcagatggaacgaaggattatcagacttgagagatcgaactcttcaaactagagttt |
36152186 |
T |
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| Q |
219 |
atttgtg-tgttgaattttccatcagttggataa |
251 |
Q |
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| T |
36152185 |
atctgtgctgttgaattttccatcggttgaataa |
36152152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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