View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20660_low_14 (Length: 239)

Name: NF20660_low_14
Description: NF20660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20660_low_14
NF20660_low_14
[»] chr2 (2 HSPs)
chr2 (10-85)||(19215544-19215620)
chr2 (25-79)||(19589281-19589335)
[»] chr7 (4 HSPs)
chr7 (10-85)||(1608831-1608906)
chr7 (26-85)||(2187905-2187964)
chr7 (26-85)||(19632940-19632999)
chr7 (88-161)||(2187812-2187884)
[»] chr5 (4 HSPs)
chr5 (26-85)||(37627427-37627486)
chr5 (26-85)||(37806536-37806596)
chr5 (10-82)||(33614671-33614743)
chr5 (10-41)||(14276313-14276344)
[»] chr1 (3 HSPs)
chr1 (10-85)||(41313953-41314030)
chr1 (88-164)||(41314051-41314126)
chr1 (132-176)||(10495134-10495178)
[»] chr8 (6 HSPs)
chr8 (10-79)||(454096-454166)
chr8 (26-85)||(29822677-29822737)
chr8 (26-85)||(7094156-7094216)
chr8 (26-85)||(7097889-7097949)
chr8 (15-85)||(45463027-45463097)
chr8 (86-162)||(29822583-29822658)
[»] chr3 (2 HSPs)
chr3 (13-78)||(5187503-5187569)
chr3 (26-79)||(8377591-8377645)
[»] chr4 (2 HSPs)
chr4 (19-70)||(11992141-11992192)
chr4 (86-128)||(637707-637749)


Alignment Details
Target: chr2 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 10 - 85
Target Start/End: Complemental strand, 19215620 - 19215544
Alignment:
Q  10 acatcatcattttaacaacaagtaaatacatatataaaata-aaaaatggagcgccctttcccttaccttagcaata 85  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||    
T  19215620 acatcatcattttaacaacaagtaaatacatatataaaatagaaaaatggagcgccctttcccttaccttaacaata 19215544  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 25 - 79
Target Start/End: Complemental strand, 19589335 - 19589281
Alignment:
Q  25 caacaagtaaatacatatataaaataaaaaatggagcgccctttcccttacctta 79  Q
    ||||||||| ||||||||| |||||||| ||||||||||| ||| ||||||||||    
T  19589335 caacaagtagatacatataaaaaataaataatggagcgccattttccttacctta 19589281  T

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Target: chr7 (Bit Score: 60; Significance: 1e-25; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 10 - 85
Target Start/End: Original strand, 1608831 - 1608906
Alignment:
Q  10 acatcatcattttaacaacaagtaaatacatatataaaataaaaaatggagcgccctttcccttaccttagcaata 85  Q
    |||||||| ||| |||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  1608831 acatcatcctttaaacaaccagtaaatacatatataaaataaaaaatggagcgcccttttccttaccttagcaata 1608906  T

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Target: chr7; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 26 - 85
Target Start/End: Complemental strand, 2187964 - 2187905
Alignment:
Q  26 aacaagtaaatacatatataaaataaaaaatggagcgccctttcccttaccttagcaata 85  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2187964 aacaagtaaatacatatataaaataaaaaatggagcgccctttcccttaccttagcaata 2187905  T

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Target: chr7; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 26 - 85
Target Start/End: Original strand, 19632940 - 19632999
Alignment:
Q  26 aacaagtaaatacatatataaaataaaaaatggagcgccctttcccttaccttagcaata 85  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  19632940 aacaagtaaatacatatataaaataaaaaatggagcgccctttcccttaccttaacaata 19632999  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 88 - 161
Target Start/End: Complemental strand, 2187884 - 2187812
Alignment:
Q  88 actcgtggtctttgctccacccaatcttcaccttcacaaataaatatttactaacttagtttccaattcctatt 161  Q
    |||| |||||||||||||||  |||||  ||||||||||| || || ||||||||| ||||||||| |||||||    
T  2187884 actcatggtctttgctccactgaatctataccttcacaaa-aagtacttactaactcagtttccaactcctatt 2187812  T

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Target: chr5 (Bit Score: 60; Significance: 1e-25; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 26 - 85
Target Start/End: Original strand, 37627427 - 37627486
Alignment:
Q  26 aacaagtaaatacatatataaaataaaaaatggagcgccctttcccttaccttagcaata 85  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37627427 aacaagtaaatacatatataaaataaaaaatggagcgccctttcccttaccttagcaata 37627486  T

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Target: chr5; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 26 - 85
Target Start/End: Original strand, 37806536 - 37806596
Alignment:
Q  26 aacaagtaaatacatatataaaataaaa-aatggagcgccctttcccttaccttagcaata 85  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  37806536 aacaagtaaatacatatataaaataaaaaaatggagcgccctttcccttaccttagcaata 37806596  T

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Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 10 - 82
Target Start/End: Original strand, 33614671 - 33614743
Alignment:
Q  10 acatcatcattttaacaacaagtaaatacatatataaaataaaaaatggagcgccctttcccttaccttagca 82  Q
    |||| ||||| ||| ||||||||| ||| ||||| |||||||| ||||||| ||||||| |||||||||||||    
T  33614671 acataatcatgttatcaacaagtagatatatataaaaaataaataatggagtgcccttttccttaccttagca 33614743  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 41
Target Start/End: Original strand, 14276313 - 14276344
Alignment:
Q  10 acatcatcattttaacaacaagtaaatacata 41  Q
    ||||||||||||||||||||||||||||||||    
T  14276313 acatcatcattttaacaacaagtaaatacata 14276344  T

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Target: chr1 (Bit Score: 59; Significance: 4e-25; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 10 - 85
Target Start/End: Original strand, 41313953 - 41314030
Alignment:
Q  10 acatcatcattttaacaacaagtaaatacatatataaaat--aaaaaatggagcgccctttcccttaccttagcaata 85  Q
    ||||||||||||||||||||||||| ||||||||||||||  ||||||||||||||| ||||||||||||||||||||    
T  41313953 acatcatcattttaacaacaagtaactacatatataaaatagaaaaaatggagcgccatttcccttaccttagcaata 41314030  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 88 - 164
Target Start/End: Original strand, 41314051 - 41314126
Alignment:
Q  88 actcgtggtctttgctccacccaatcttcaccttcacaaataaatatttactaacttagtttccaattcctattact 164  Q
    |||| |||||||||||||||  ||||| |||||||||||| || || ||||||||| ||||||||| ||||||||||    
T  41314051 actcatggtctttgctccacggaatctacaccttcacaaa-aagtacttactaactcagtttccaactcctattact 41314126  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 176
Target Start/End: Original strand, 10495134 - 10495178
Alignment:
Q  132 tatttactaacttagtttccaattcctattactcttgattcctac 176  Q
    |||||||||||| | ||||||||||||||||||| | ||||||||    
T  10495134 tatttactaactcaatttccaattcctattactcctaattcctac 10495178  T

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Target: chr8 (Bit Score: 55; Significance: 1e-22; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 10 - 79
Target Start/End: Original strand, 454096 - 454166
Alignment:
Q  10 acatcatcattttaacaacaagtaaatacatatataaaat-aaaaaatggagcgccctttcccttacctta 79  Q
    ||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| |||||||    
T  454096 acatcatcattttaacaacaagtaactacatatataaaataaaaaaatggagcgccctttcccgtacctta 454166  T

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Target: chr8; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 26 - 85
Target Start/End: Complemental strand, 29822737 - 29822677
Alignment:
Q  26 aacaagtaaatacatatataaaataaaaaa-tggagcgccctttcccttaccttagcaata 85  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  29822737 aacaagtaaatacatatataaaataaaaaaatggagcgccctttcccttaccttagcaata 29822677  T

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Target: chr8; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 26 - 85
Target Start/End: Original strand, 7094156 - 7094216
Alignment:
Q  26 aacaagtaaatacatatataaaataaaa-aatggagcgccctttcccttaccttagcaata 85  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||    
T  7094156 aacaagtaaatacatatataaaataaaaaaatggagcgccctttcccttaccttaacaata 7094216  T

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Target: chr8; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 26 - 85
Target Start/End: Original strand, 7097889 - 7097949
Alignment:
Q  26 aacaagtaaatacatatataaaataaaa-aatggagcgccctttcccttaccttagcaata 85  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||    
T  7097889 aacaagtaaatacatatataaaataaaaaaatggagcgccctttcccttaccttaacaata 7097949  T

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Target: chr8; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 15 - 85
Target Start/End: Original strand, 45463027 - 45463097
Alignment:
Q  15 atcattttaacaacaagtaaatacatatataaaataaaaaatggagcgccctttcccttaccttagcaata 85  Q
    ||||| ||||||| || || ||| |||||||||||||| ||||||||||||||||||||||||||||||||    
T  45463027 atcatgttaacaataaatagatatatatataaaataaataatggagcgccctttcccttaccttagcaata 45463097  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 86 - 162
Target Start/End: Complemental strand, 29822658 - 29822583
Alignment:
Q  86 caactcgtggtctttgctccacccaatcttcaccttcacaaataaatatttactaacttagtttccaattcctatta 162  Q
    ||||||||||| ||||||||||  ||||  |||||||| ||| || |||||||||||| |||||  |||||||||||    
T  29822658 caactcgtggtatttgctccactgaatccacaccttcataaa-aagtatttactaactcagttttgaattcctatta 29822583  T

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Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 13 - 78
Target Start/End: Original strand, 5187503 - 5187569
Alignment:
Q  13 tcatcattttaacaacaagtaaatacatatataaaat-aaaaaatggagcgccctttcccttacctt 78  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||    
T  5187503 tcatcattttaacaacaagtaaatacatatataaaataaaaaaatggagcgacctttcccttacctt 5187569  T

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Target: chr3; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 26 - 79
Target Start/End: Complemental strand, 8377645 - 8377591
Alignment:
Q  26 aacaagtaaatacatatataaaataaaaaa-tggagcgccctttcccttacctta 79  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  8377645 aacaagtaaatacatatataaaataaaaaaatggagcgccctttcccttacctta 8377591  T

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Target: chr4 (Bit Score: 52; Significance: 6e-21; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 19 - 70
Target Start/End: Original strand, 11992141 - 11992192
Alignment:
Q  19 ttttaacaacaagtaaatacatatataaaataaaaaatggagcgccctttcc 70  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11992141 ttttaacaacaagtaaatacatatataaaataaaaaatggagcgccctttcc 11992192  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 86 - 128
Target Start/End: Complemental strand, 637749 - 637707
Alignment:
Q  86 caactcgtggtctttgctccacccaatcttcaccttcacaaat 128  Q
    ||||||||||||||||||||||| |||||||||||||| ||||    
T  637749 caactcgtggtctttgctccaccaaatcttcaccttcaaaaat 637707  T

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