View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20660_low_2 (Length: 438)
Name: NF20660_low_2
Description: NF20660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20660_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 386; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 16 - 425
Target Start/End: Complemental strand, 28576320 - 28575911
Alignment:
| Q |
16 |
ctttggtggtctaggcttaaggagactcaacgtaatgaataaggcgtgcataatgaaaatgggttggagtatatattatggatcaacttctctttgggct |
115 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||| |
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| T |
28576320 |
ctttggtggtctaggcttaaggagactcaacgtaatgaataaggcgtgcataatgaaactgggttggagtatatattctggatcaacttctctttgggct |
28576221 |
T |
|
| Q |
116 |
gaggttatgaggggtaaatatcagcgaagtgatattcctgctgagttatttatagcaaaaccgtcggattcaagcctctggaaggctttagtaaagttat |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28576220 |
gaggttatgaggggtaaatatcagcgaagtgatattcctgctgagttatttatagcaaaaccgtcggattcaagcctctggaaggctttagtaaagttat |
28576121 |
T |
|
| Q |
216 |
ggcctgcgttagagcgaaatattttttggtcgataggcgatggtaaaagtgttggtgcctggagtcaaatgtggattgaggagaggctttgtgtgtccga |
315 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
28576120 |
ggcctgcattagagcgaaatattttttggtcgataggcgatggtaaaagtgttggagcctggattcaaatgtggattgaggagaggctttgtgtgtccga |
28576021 |
T |
|
| Q |
316 |
gttagaaattgatattccgcaatagtgtaaagagatgaaggttgcagatctggttgattttaatggtaattggaattttgaattgttgaatcaatggttg |
415 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28576020 |
gttagaaattgatattccgcaacagtgtaaagagatgaaggttgcagatctggttgattttaatggtaattggaattttgaattgttgaatcaatggttg |
28575921 |
T |
|
| Q |
416 |
ccttatgatg |
425 |
Q |
| |
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|||||||||| |
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| T |
28575920 |
ccttatgatg |
28575911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 386; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 16 - 425
Target Start/End: Original strand, 16236124 - 16236533
Alignment:
| Q |
16 |
ctttggtggtctaggcttaaggagactcaacgtaatgaataaggcgtgcataatgaaaatgggttggagtatatattatggatcaacttctctttgggct |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||| |
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| T |
16236124 |
ctttggtggtctaggcttaaggagactcaacgtaatgaataaggcgtgcataatgaaactgggttggagtatatattctggatcaacttctctttgggct |
16236223 |
T |
|
| Q |
116 |
gaggttatgaggggtaaatatcagcgaagtgatattcctgctgagttatttatagcaaaaccgtcggattcaagcctctggaaggctttagtaaagttat |
215 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16236224 |
gaggttatgaggggtaaatatcagcgaagtgatattcttgctgagttatttatagcaaaaccgtcggattcaagcctctggaaggctttagtaaagttat |
16236323 |
T |
|
| Q |
216 |
ggcctgcgttagagcgaaatattttttggtcgataggcgatggtaaaagtgttggtgcctggagtcaaatgtggattgaggagaggctttgtgtgtccga |
315 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16236324 |
ggcctgcattagagcgaaatattttttggtcgataggcgatggtaaaagtgttggagcctggagtcaaatgtggattgaggagaggctttgtgtgtccga |
16236423 |
T |
|
| Q |
316 |
gttagaaattgatattccgcaatagtgtaaagagatgaaggttgcagatctggttgattttaatggtaattggaattttgaattgttgaatcaatggttg |
415 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16236424 |
gttagaaattgatattccgcaacagtgtaaagagatgaaggttgcagatctggttgattttaatggtaattggaattttgaattgttgaatcaatggttg |
16236523 |
T |
|
| Q |
416 |
ccttatgatg |
425 |
Q |
| |
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|||||||||| |
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| T |
16236524 |
ccttatgatg |
16236533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 16 - 425
Target Start/End: Complemental strand, 32715228 - 32714819
Alignment:
| Q |
16 |
ctttggtggtctaggcttaaggagactcaacgtaatgaataaggcgtgcataatgaaaatgggttggagtatatattatggatcaacttctctttgggct |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||| |
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| T |
32715228 |
ctttggtggtctaggcttaaggagactcaacgtaatgaataaggcgtgcataatgaaactgggttggagtatatattctggatcaacttctctttgggct |
32715129 |
T |
|
| Q |
116 |
gaggttatgaggggtaaatatcagcgaagtgatattcctgctgagttatttatagcaaaaccgtcggattcaagcctctggaaggctttagtaaagttat |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32715128 |
gaggttatgaggggtaaatatcagcgaagtgatattcctgctgagttatttatagcaaaaccgtcggattcaagcctctggaaggctttagtaaagttat |
32715029 |
T |
|
| Q |
216 |
ggcctgcgttagagcgaaatattttttggtcgataggcgatggtaaaagtgttggtgcctggagtcaaatgtggattgaggagaggctttgtgtgtccga |
315 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
32715028 |
ggcctgctttagagcgaaatattttttggtcgataggcgatggtaaaagtgttggagcctggattcaaatgtggattgaggagaggctttgtgtgtccga |
32714929 |
T |
|
| Q |
316 |
gttagaaattgatattccgcaatagtgtaaagagatgaaggttgcagatctggttgattttaatggtaattggaattttgaattgttgaatcaatggttg |
415 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
32714928 |
gttagaaattgatattccgcaacagtgtaaagagatgaaggttgcagatctggttgatttttatggtaattggaattttgaattgttgaatcaatggttg |
32714829 |
T |
|
| Q |
416 |
ccttatgatg |
425 |
Q |
| |
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|||||||||| |
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|
| T |
32714828 |
ccttatgatg |
32714819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 119; Significance: 1e-60; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 203 - 425
Target Start/End: Original strand, 18567799 - 18568021
Alignment:
| Q |
203 |
ttagtaaagttatggcctgcgttagagcgaaatattttttggtcgataggcgatggtaaaagtgttggtgcctggagtcaaatgtggattgaggagaggc |
302 |
Q |
| |
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||||||||| |||||||| || ||||| ||||||||||| |||||||||| |||| ||||||||||| || | |||||||||||||||||||| ||||| |
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| T |
18567799 |
ttagtaaagctatggcctacgatagagagaaatatttttgggtcgataggtaatggaaaaagtgttggagctttgagtcaaatgtggattgaggcgaggc |
18567898 |
T |
|
| Q |
303 |
tttgtgtgtccgagttagaaattgatattccgcaatagtgtaaagagatgaaggttgcagatctggttgattttaatggtaattggaattttgaattgtt |
402 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||| | || ||||||||||| |||||||||| ||||| ||| ||||||| || |||| |
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| T |
18567899 |
gttgtgtgtccgagttagaaattgatattccgcaagagtgtaaaaacattaaggttgcagagttggttgatttcaatggaaatcggaatttggatatgtt |
18567998 |
T |
|
| Q |
403 |
gaatcaatggttgccttatgatg |
425 |
Q |
| |
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|||||||| |||||||||||||| |
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| T |
18567999 |
gaatcaatagttgccttatgatg |
18568021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 50 - 144
Target Start/End: Original strand, 5698467 - 5698561
Alignment:
| Q |
50 |
atgaataaggcgtgcataatgaaaatgggttggagtatatattatggatcaacttctctttgggctgaggttatgaggggtaaatatcagcgaag |
144 |
Q |
| |
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||||| ||||||||||| ||||| ||||||||||||| || | |||||||| |||||||| ||||||||||||| ||||||||||||||||| |
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| T |
5698467 |
atgaacaaggcgtgcatcatgaagttgggttggagtatttactctggatcaaactctctttgtactgaggttatgagaggtaaatatcagcgaag |
5698561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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