View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20660_low_3 (Length: 428)
Name: NF20660_low_3
Description: NF20660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20660_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 396; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 1 - 412
Target Start/End: Complemental strand, 32272893 - 32272482
Alignment:
| Q |
1 |
caaaccatttggaaggaaacagtcgaacatggaagaagtgacaaatattgtggtgctgaaaccatgtcctccaacttgatacacaatagatgtatttatg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
32272893 |
caaaccatttggaaggaaacagtcgaacatgaaagaagtgacaaatattgtggtgctgaaaccatgtcctccaacttgatacacaatagatgtatttatg |
32272794 |
T |
|
| Q |
101 |
aacgatctattgatggagaaggcggttctcgtaacgtggagatgacccctgaaatggtgacaccaatacaacaattgagtcagcagatgcagactcaaaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
32272793 |
aacgatctattgatggagaaggcggttctcgtaacgtggagatgacccctgaaatggtgacactaatacaacaattgagtcagcagatgcagactcaaaa |
32272694 |
T |
|
| Q |
201 |
tcaagtggagcttgaacaagcgaggactcagagtcgaaaagagcttgaagagatgaggactcaagtatggaggagcctcccaacaccgtccttgaaggca |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
32272693 |
tcaagtggagcttgaacaagcgaggactcagagtcgaaaagagcttgaagagatgaggactcaagtatggaggagcctctcaacaccgtccttgaaggca |
32272594 |
T |
|
| Q |
301 |
aggtgtgcaatgctgcaactttgagcatgggtggaatcggtaaacaaggtagtcggcataccttgttgtaattactttttgttacgcattgtcagcttaa |
400 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32272593 |
aggtgtgcaatgctgccactttgagcatgggtggaatcggtaaacaaggtagtcggcataccttgttgtaattactttttgttacgcattgtcagcttaa |
32272494 |
T |
|
| Q |
401 |
ggagctcaatac |
412 |
Q |
| |
|
|||||||||||| |
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|
| T |
32272493 |
ggagctcaatac |
32272482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 1 - 261
Target Start/End: Complemental strand, 24551797 - 24551538
Alignment:
| Q |
1 |
caaaccatttggaaggaaacagtcgaacatggaagaagtgacaaatattgtggtgctgaaaccatgtcctccaacttgatacacaatagatgtatttatg |
100 |
Q |
| |
|
||||||||||||||||||| ||||| || ||||| |||| ||||||||| |||||||| | ||||| ||||||| ||| ||||||||||||||||||||| |
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|
| T |
24551797 |
caaaccatttggaaggaaatagtcggacgtggaaaaagttacaaatattatggtgctggatccatggcctccaatttggtacacaatagatgtatttatg |
24551698 |
T |
|
| Q |
101 |
aacgatctattgatggagaaggcggttctcgtaacgtggagatgacccctgaaatggtgacaccaatacaacaattgagtcagcagatgcagactcaaaa |
200 |
Q |
| |
|
||||||| ||||||||||||||||| |||||||| ||||||||| | ||||||||||| || ||||||||||||||||| |||||||| ||||||| |
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| T |
24551697 |
aacgatcgattgatggagaaggcggctctcgtaatgtggagatg-cacctgaaatggttgcaatgatacaacaattgagtcaacagatgcaatctcaaaa |
24551599 |
T |
|
| Q |
201 |
tcaagtggagcttgaacaagcgaggactcagagtcgaaaagagcttgaagagatgaggact |
261 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||| ||| |||||||||||||| |
|
|
| T |
24551598 |
tcaagtggagcttgaacaagcgaggactcagagtcaaaaagaacttcaagagatgaggact |
24551538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 296 - 346
Target Start/End: Complemental strand, 32809140 - 32809089
Alignment:
| Q |
296 |
aggcaaggtgtgcaatg-ctgcaactttgagcatgggtggaatcggtaaaca |
346 |
Q |
| |
|
||||||||||||||| | ||||||| ||| |||||||||||||||||||||| |
|
|
| T |
32809140 |
aggcaaggtgtgcaaaggctgcaaccttgggcatgggtggaatcggtaaaca |
32809089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 159; Significance: 2e-84; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 1 - 263
Target Start/End: Original strand, 13899964 - 13900226
Alignment:
| Q |
1 |
caaaccatttggaaggaaacagtcgaacatggaagaagtgacaaatattgtggtgctgaaaccatgtcctccaacttgatacacaatagatgtatttatg |
100 |
Q |
| |
|
||||||||||||||||||| ||||| || ||||| |||| ||||||||| |||||||| | ||||| ||||||||||| || |||||||||||||||||| |
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|
| T |
13899964 |
caaaccatttggaaggaaatagtcggacgtggaaaaagttacaaatattatggtgctggatccatggcctccaacttgctaaacaatagatgtatttatg |
13900063 |
T |
|
| Q |
101 |
aacgatctattgatggagaaggcggttctcgtaacgtggagatgacccctgaaatggtgacaccaatacaacaattgagtcagcagatgcagactcaaaa |
200 |
Q |
| |
|
||||||| ||||||||||||||||| |||||||| ||||||||||| |||||||||||| || ||||||||||||||||| || ||||| ||||||| |
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|
| T |
13900064 |
aacgatcgattgatggagaaggcggctctcgtaatgtggagatgacacctgaaatggtggcaatgatacaacaattgagtcaacatatgcaatctcaaaa |
13900163 |
T |
|
| Q |
201 |
tcaagtggagcttgaacaagcgaggactcagagtcgaaaagagcttgaagagatgaggactca |
263 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||| ||| |||||||||||||||| |
|
|
| T |
13900164 |
tcaagtggagcttgaacaagcgaggactcagagtcaaaaagaacttcaagagatgaggactca |
13900226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 1 - 263
Target Start/End: Original strand, 13574060 - 13574322
Alignment:
| Q |
1 |
caaaccatttggaaggaaacagtcgaacatggaagaagtgacaaatattgtggtgctgaaaccatgtcctccaacttgatacacaatagatgtatttatg |
100 |
Q |
| |
|
||||||||||||||||||| ||||| || ||||| |||| ||||||||| ||||||| | ||||| ||||||||||| ||||||||||||||||||||| |
|
|
| T |
13574060 |
caaaccatttggaaggaaaaagtcggacgtggaaaaagttacaaatattaaggtgctggatccatggcctccaacttggtacacaatagatgtatttatg |
13574159 |
T |
|
| Q |
101 |
aacgatctattgatggagaaggcggttctcgtaacgtggagatgacccctgaaatggtgacaccaatacaacaattgagtcagcagatgcagactcaaaa |
200 |
Q |
| |
|
||||||| ||||||||||| ||||| |||||||| ||||||||||| |||||||||||| ||| ||||||||||||||||| |||||||| ||||||| |
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|
| T |
13574160 |
aacgatcgattgatggagacggcggctctcgtaatgtggagatgacacctgaaatggtggcactgatacaacaattgagtcaacagatgcaatctcaaaa |
13574259 |
T |
|
| Q |
201 |
tcaagtggagcttgaacaagcgaggactcagagtcgaaaagagcttgaagagatgaggactca |
263 |
Q |
| |
|
|||||||||||||||||||||||||||| | |||| |||||| ||| |||||||||||||||| |
|
|
| T |
13574260 |
tcaagtggagcttgaacaagcgaggactaaaagtcaaaaagaacttcaagagatgaggactca |
13574322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 151; Significance: 9e-80; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 151; E-Value: 9e-80
Query Start/End: Original strand, 1 - 263
Target Start/End: Original strand, 19138846 - 19139108
Alignment:
| Q |
1 |
caaaccatttggaaggaaacagtcgaacatggaagaagtgacaaatattgtggtgctgaaaccatgtcctccaacttgatacacaatagatgtatttatg |
100 |
Q |
| |
|
||||||||||||||||||| ||||| | ||||| |||| ||||||||| |||||||| | ||||| ||||||||||| ||||||||||||||||||||| |
|
|
| T |
19138846 |
caaaccatttggaaggaaatagtcggatgtggaaaaagttacaaatattatggtgctggatccatggcctccaacttggtacacaatagatgtatttatg |
19138945 |
T |
|
| Q |
101 |
aacgatctattgatggagaaggcggttctcgtaacgtggagatgacccctgaaatggtgacaccaatacaacaattgagtcagcagatgcagactcaaaa |
200 |
Q |
| |
|
||||||| ||||||||||||||||| |||||||| ||||||||||| |||||||||||| || ||||| || |||||||||||||| | ||||||| |
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|
| T |
19138946 |
aacgatcgattgatggagaaggcggctctcgtaatgtggagatgacacctgaaatggtggcaatgatacagcatatgagtcagcagatgaaatctcaaaa |
19139045 |
T |
|
| Q |
201 |
tcaagtggagcttgaacaagcgaggactcagagtcgaaaagagcttgaagagatgaggactca |
263 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||| ||| |||||||||||||||| |
|
|
| T |
19139046 |
tcaagtggagcttgaacaagcgaggactcagagtcaaaaagaacttcaagagatgaggactca |
19139108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 131; Significance: 8e-68; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 23964964 - 23965194
Alignment:
| Q |
1 |
caaaccatttggaaggaaacagtcgaacatggaagaagtgacaaatattgtggtgctgaaaccatgtcctccaacttgatacacaatagatgtatttatg |
100 |
Q |
| |
|
||||||||||||||||||| |||| || ||||| |||| ||||||||| |||||||| | ||||| ||||||||||| ||||||||||||||||||||| |
|
|
| T |
23964964 |
caaaccatttggaaggaaatagtctgacgtggaaaaagttacaaatattatggtgctggatccatggcctccaacttggtacacaatagatgtatttatg |
23965063 |
T |
|
| Q |
101 |
aacgatctattgatggagaaggcggttctcgtaacgtggagatgacccctgaaatggtgacaccaatacaacaattgagtcagcagatgcagactcaaaa |
200 |
Q |
| |
|
||||||| ||||||||||| ||||| |||||||| | ||||||||| |||||||||||| ||| |||||||||| |||||| |||||||| ||||||| |
|
|
| T |
23965064 |
aacgatcgattgatggagatggcggctctcgtaatgcggagatgacacctgaaatggtggcactgatacaacaatcgagtcaacagatgcaatctcaaaa |
23965163 |
T |
|
| Q |
201 |
tcaagtggagcttgaacaagcgaggactcag |
231 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
23965164 |
acaagtggagcttgaacaagcgaggactcag |
23965194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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