View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20660_low_6 (Length: 374)
Name: NF20660_low_6
Description: NF20660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20660_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 4 - 355
Target Start/End: Complemental strand, 36591627 - 36591286
Alignment:
| Q |
4 |
gcaccacactatagacttaacttctctgaaccgttgctatgacaagggtgattcagctagcttgaaagtgatttctcaccagctacaatgaattgaga-a |
102 |
Q |
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| T |
36591627 |
gcaccacactataaacttagcttctctgaaccgttgctatgacaagggtgattcagctagcctgaaagtgatttttcaccagctacaatgaattcagcta |
36591528 |
T |
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| Q |
103 |
gacttagcttctgattgattttattattaagattattagtagtaatatataggcactagatcgttcctctaaagtgtaacgtaagaagctctttgagtac |
202 |
Q |
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| T |
36591527 |
gccttaaccgttgcat------attatta---ttattagtaataatatatagggcctagattgttcctctaaagtgtaacgtaagaagctctttgagtac |
36591437 |
T |
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| Q |
203 |
acaatgccaccttacacctacta---gatttgaatggtcttgtggagtatcaaaattaaatgttaataaaacaagcttggattattgcttcggacaaaac |
299 |
Q |
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| T |
36591436 |
acaatgccaccttacacctactactagctttgaatggtcttttggagtatcaatat-----gttaataaaacaagcttggattatttcttcggacaaaac |
36591342 |
T |
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| Q |
300 |
gtgtatttaaatattacgttccaaactaaattacccctaaaaagcaataataatcc |
355 |
Q |
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| T |
36591341 |
gtgtatttaaatattacgttccaaactaaattacccctaaaaagcaataataatcc |
36591286 |
T |
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