View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20660_low_8 (Length: 346)
Name: NF20660_low_8
Description: NF20660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20660_low_8 |
 | |
|
| [»] scaffold0070 (1 HSPs) |
| | |
|
| [»] scaffold0060 (1 HSPs) |
| | |
|
| [»] scaffold2006 (1 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 275; Significance: 1e-154; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 19 - 336
Target Start/End: Original strand, 19216066 - 19216381
Alignment:
| Q |
19 |
cataattggttggagcccacaaatatctacgaagaacttttgttgccctataagggaggtgatatccggatcatttgtgtcgcatctaggtcaaccttta |
118 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19216066 |
cataattggttgaagcccacaaatatctacgaagaacttttgttgccctataagggaggtgatatccggatcatttgtgtcgcatctaggtcaaccttta |
19216165 |
T |
|
| Q |
119 |
gggtgttgtgcatttgtcgagtccattgttgttttgggtgttgacattttgtgtactttatgttaatatttgtactatttgcatgcctttaaatacatgt |
218 |
Q |
| |
|
||| | |||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
19216166 |
gggcgctgtgcatttgtcgagtccattgttgttttgggtgatgacattttgtgtactttatattaatatttgtactatttgcatacctttaaatacatgt |
19216265 |
T |
|
| Q |
219 |
taaataaatgtataatttgtatatttgtttgtttttgggagttgacccttttccgtatttgaaaatcagataatgataatgatttacagttggaggctcc |
318 |
Q |
| |
|
||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
19216266 |
taaataaatgtataacttgtatatttgtttg--tttgggagttgacccttttccgtatttgaaaatcagataatgataatgacttacagttggaggctcc |
19216363 |
T |
|
| Q |
319 |
gagatatgtggacctttg |
336 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
19216364 |
gagatatgtggacctttg |
19216381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 19 - 95
Target Start/End: Original strand, 19591316 - 19591392
Alignment:
| Q |
19 |
cataattggttggagcccacaaatatctacgaagaacttttgttgccctataagggaggtgatatccggatcatttg |
95 |
Q |
| |
|
||||||||||| |||||||||||||||||||| || || |||||||||| |||||| |||||||| | |||||||| |
|
|
| T |
19591316 |
cataattggttaaagcccacaaatatctacgaaaaatttatgttgccctaaaagggatgtgatatctgaatcatttg |
19591392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 235 - 336
Target Start/End: Original strand, 19591904 - 19592005
Alignment:
| Q |
235 |
ttgtatatttgtttgtttttgggagttgacccttttccgtatttgaaaatcagataatgataatgatttacagttggaggctccgagatatgtggacctt |
334 |
Q |
| |
|
|||||||||| ||||| || ||||||||| |||||| |||||| ||||| |||||||| | || |||| |||| || |||||||||||||| ||||| |
|
|
| T |
19591904 |
ttgtatattttgttgttgtttggagttgactcttttcagtattttggaatcaaataatgatcacgacttacggttgaagactccgagatatgtgaacctt |
19592003 |
T |
|
| Q |
335 |
tg |
336 |
Q |
| |
|
|| |
|
|
| T |
19592004 |
tg |
19592005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 275; Significance: 1e-154; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 19 - 336
Target Start/End: Complemental strand, 41313514 - 41313199
Alignment:
| Q |
19 |
cataattggttggagcccacaaatatctacgaagaacttttgttgccctataagggaggtgatatccggatcatttgtgtcgcatctaggtcaaccttta |
118 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| |
|
|
| T |
41313514 |
cataattggttgaagcccacaaatatctacgaagaacttttgttgccctataagggaggtgatatccggatcatttgtgtcgcgtataggtcaaccttta |
41313415 |
T |
|
| Q |
119 |
gggtgttgtgcatttgtcgagtccattgttgttttgggtgttgacattttgtgtactttatgttaatatttgtactatttgcatgcctttaaatacatgt |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41313414 |
gggtgttgtgcatttgtcgagtccattgttgctttgggtgttgacattttgtgtactttatattaatatttgtactatttgcatgcctttaaatacatgt |
41313315 |
T |
|
| Q |
219 |
taaataaatgtataatttgtatatttgtttgtttttgggagttgacccttttccgtatttgaaaatcagataatgataatgatttacagttggaggctcc |
318 |
Q |
| |
|
||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| |
|
|
| T |
41313314 |
taaataaatgtataacttgtatatttgtttg--tttgggagttgacccttttccgtatttgaaaatcagataataataatgacttacagttggaggctcc |
41313217 |
T |
|
| Q |
319 |
gagatatgtggacctttg |
336 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
41313216 |
gagatatgtggacctttg |
41313199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 239 - 321
Target Start/End: Original strand, 20448215 - 20448294
Alignment:
| Q |
239 |
atatttgtttgtttttgggagttgacccttttccgtatttgaaaatcagataatgataatgatttacagttggaggctccgag |
321 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||| |||| ||||||||||||||| ||||||||||||||| |||| |
|
|
| T |
20448215 |
atatttgtttgttt--gggagttgacccttttccgtatttg-aaattagataatgataatgacttacagttggaggcttcgag |
20448294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 239 - 321
Target Start/End: Original strand, 20533982 - 20534061
Alignment:
| Q |
239 |
atatttgtttgtttttgggagttgacccttttccgtatttgaaaatcagataatgataatgatttacagttggaggctccgag |
321 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||| |||| ||||||||||||||| ||||||||||||||| |||| |
|
|
| T |
20533982 |
atatttgtttgttt--gggagttgacccttttccgtatttg-aaattagataatgataatgacttacagttggaggcttcgag |
20534061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 267; Significance: 1e-149; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 19 - 336
Target Start/End: Complemental strand, 37626973 - 37626659
Alignment:
| Q |
19 |
cataattggttggagcccacaaatatctacgaagaacttttgttgccctataagggaggtgatatccggatcatttgtgtcgcatctaggtcaaccttta |
118 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
37626973 |
cataattggttgaagcccacaaatatctacgaagaacttttgttgccctataagggaggtgatatccggatcatttgtgtcgcatataggtcaaccttta |
37626874 |
T |
|
| Q |
119 |
gggtgttgtgcatttgtcgagtccattgttgttttgggtgttgacattttgtgtactttatgttaatatttgtactatttgcatgcctttaaatacatgt |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37626873 |
gggtgttgtgcatttgtcgagtccattgttgttttgggtgttgaca-catgtgtactttatattaatatttgtactatttgcatgcctttaaatacatgt |
37626775 |
T |
|
| Q |
219 |
taaataaatgtataatttgtatatttgtttgtttttgggagttgacccttttccgtatttgaaaatcagataatgataatgatttacagttggaggctcc |
318 |
Q |
| |
|
||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||| |
|
|
| T |
37626774 |
taaataaatgtataacttgtatatttgtttg--tttgggagttgacccttttccgtatttgaaaatcagataatgataatgacttacggttggaggctcc |
37626677 |
T |
|
| Q |
319 |
gagatatgtggacctttg |
336 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
37626676 |
gagatatgtggacctttg |
37626659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 19 - 336
Target Start/End: Complemental strand, 37803514 - 37803199
Alignment:
| Q |
19 |
cataattggttggagcccacaaatatctacgaagaacttttgttgccctataagggaggtgatatccggatcatttgtgtcgcatctaggtcaaccttta |
118 |
Q |
| |
|
|||||||||||| |||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| |||| |
|
|
| T |
37803514 |
cataattggttgaagcccacaaatatctatgaagaacttttgttgccctctaagggaggtgatatccggatcatttgtgtcgcatataggtcaacattta |
37803415 |
T |
|
| Q |
119 |
gggtgttgtgcatttgtcgagtccattgttgttttgggtgttgacattttgtgtactttatgttaatatttgtactatttgcatgcctttaaatacatgt |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37803414 |
gggtgttgtgcatttgtcgagtccattgttgtattgggtgttgacattttgtgtactttatattaatatttgtactatttgcatgcctttaaatacatgt |
37803315 |
T |
|
| Q |
219 |
taaataaatgtataatttgtatatttgtttgtttttgggagttgacccttttccgtatttgaaaatcagataatgataatgatttacagttggaggctcc |
318 |
Q |
| |
|
||||||||||||||| ||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||| |
|
|
| T |
37803314 |
taaataaatgtataacttgtatatttgtttg--tttggaagttgacccttttccgtatttgaaaatcagataatgataatgacttacggttggaggctcc |
37803217 |
T |
|
| Q |
319 |
gagatatgtggacctttg |
336 |
Q |
| |
|
||||||||| |||||||| |
|
|
| T |
37803216 |
gagatatgtagacctttg |
37803199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 19 - 334
Target Start/End: Complemental strand, 14275874 - 14275555
Alignment:
| Q |
19 |
cataattggttggagcccacaaatatctacgaagaactttt-gttgccctataagggaggtgatatccggatcatttgtgtcgcatctaggtcaaccttt |
117 |
Q |
| |
|
|||||||||||| | |||||| ||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| |||||||| | || |
|
|
| T |
14275874 |
cataattggttgaaacccacacatatctacgaagaactttttgttgccctataagggaggtgatatccaaatcatttgtgtcgcatataggtcaatcctt |
14275775 |
T |
|
| Q |
118 |
agggtgttgtgcatttgtcgagtccattgttgttttgggtgttgacattttgtgtactttatgttaatatttgtactatttgcatgcctttaaatacatg |
217 |
Q |
| |
|
||||||| |||||||||||||||||| || ||||| ||||||||| ||||| ||||| |||| |||||| || |||||||| ||| || ||||||||| |
|
|
| T |
14275774 |
agggtgtcgtgcatttgtcgagtccactggtgtttggggtgttgatattttatgtaccttatattaataattatactattttaatggtttaaaatacatg |
14275675 |
T |
|
| Q |
218 |
ttaaata--aatgtataatttgtatatttgtttgtttttgggagttgaccc-ttttccgtatttgaaaatcagataatgataatgatttacagttggagg |
314 |
Q |
| |
|
||||||| ||||| ||| |||||| |||||| | ||||||||||||||| |||||||||||||||||||||||||||||| |||||||||| || | |
|
|
| T |
14275674 |
ttaaatatcaatgtgtaacttgtatgtttgttgttgtttgggagttgaccctttttccgtatttgaaaatcagataatgatatcaatttacagttagaag |
14275575 |
T |
|
| Q |
315 |
ctccgagatatgtggacctt |
334 |
Q |
| |
|
|| ||||| ||||||||||| |
|
|
| T |
14275574 |
cttcgagaaatgtggacctt |
14275555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 259; Significance: 1e-144; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 19 - 336
Target Start/End: Original strand, 2188420 - 2188734
Alignment:
| Q |
19 |
cataattggttggagcccacaaatatctacgaagaacttttgttgccctataagggaggtgatatccggatcatttgtgtcgcatctaggtcaaccttta |
118 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||| |
|
|
| T |
2188420 |
cataattggttgaagcccacaaatatctacgaagaacttttgttgccctataagg-aggtgatatccggatcatttgtgtcgcatataggttaaccttta |
2188518 |
T |
|
| Q |
119 |
gggtgttgtgcatttgtcgagtccattgttgttttgggtgttgacattttgtgtactttatgttaatatttgtactatttgcatgcctttaaatacatgt |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
2188519 |
gggtgttgtgcatttgtcgagtccattgttgttttgggtgttgacattttgtgtactttatattaatatttgtactatttgcatgtctttaaatacatgt |
2188618 |
T |
|
| Q |
219 |
taaataaatgtataatttgtatatttgtttgtttttgggagttgacccttttccgtatttgaaaatcagataatgataatgatttacagttggaggctcc |
318 |
Q |
| |
|
||||||||||||||| ||||||||||||||| |||||||| | || ||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
2188619 |
taaataaatgtataacttgtatatttgtttg--tttgggagctaacacttttccgtatttgaaaatcagataatgataatgacttacagttggaggctcc |
2188716 |
T |
|
| Q |
319 |
gagatatgtggacctttg |
336 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
2188717 |
gagatatgtggacctttg |
2188734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 19 - 336
Target Start/End: Complemental strand, 19632485 - 19632172
Alignment:
| Q |
19 |
cataattggttggagcccacaaatatctacgaagaacttttgttgccctataagggaggtgatatccggatcatttgtgtcgcatctaggtcaaccttta |
118 |
Q |
| |
|
|||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||| |
|
|
| T |
19632485 |
cataattggttgaagcccacaattatctacgaagaacttttgttgccctataagggaggtgatatccagatcatttgtgtcgcatataggtcaa-cttta |
19632387 |
T |
|
| Q |
119 |
gggtgttgtgcatttgtcgagtccattgttgttttgggtgttgacattttgtgtactttatgttaatatttgtactatttgcatgcctttaaatacatgt |
218 |
Q |
| |
|
||||| || ||||||||||||||| || ||| |||||| |||||| |||||||| ||||| ||| |||||||||||||||| || ||| |||||| ||| |
|
|
| T |
19632386 |
aggtgtcgttcatttgtcgagtccactggtgtcttgggtcttgaca-tttgtgtagtttatattattatttgtactatttgcttgtcttgaaatacctgt |
19632288 |
T |
|
| Q |
219 |
taaataaatgtataatttgtatatttgtttgtttttgggagttgacccttttccgtatttgaaaatcagataatgataatgatttacagttggaggctcc |
318 |
Q |
| |
|
|||||| |||||||| ||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
19632287 |
taaatatatgtataacttgtatatttgtttg--tttgggagttgacctttttccgtatttgaaaatcagataatgataatgacttacagttggaggctcc |
19632190 |
T |
|
| Q |
319 |
gagatatgtggacctttg |
336 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
19632189 |
gagatatgtggacctttg |
19632172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 19 - 334
Target Start/End: Complemental strand, 1608394 - 1608085
Alignment:
| Q |
19 |
cataattggttggagcccacaaatatctacgaagaacttttgttgccctat-aagggaggtgatatccggatcatttgtgtcgcatctaggtcaaccttt |
117 |
Q |
| |
|
|||||||||||| ||| ||||||||||||||||||| |||||||||||| | |||||||||||||||||||||||||||||||||| |||||||| |||| |
|
|
| T |
1608394 |
cataattggttgaagctcacaaatatctacgaagaaattttgttgcccttttaagggaggtgatatccggatcatttgtgtcgcatataggtcaa-cttt |
1608296 |
T |
|
| Q |
118 |
agggtgttgtgcatttgtcgagtccattgttgt-tttgggtgttgacattttgtgtactttatgttaatatttgtactatttgcatgcctttaaatacat |
216 |
Q |
| |
|
| ||||| || ||||||||||||||| | ||| || |||| ||||||||||| ||| ||||| ||| |||||||||||||||| || ||| | |
|
|
| T |
1608295 |
aaggtgtcgttcatttgtcgagtccactagtgtcttggggtcttgacattttgcgtagtttatattattatttgtactatttgcttgactt--------t |
1608204 |
T |
|
| Q |
217 |
gttaaataaatgtataatttgtatatttgtttgtttttgggagttgaccc-ttttccgtatttgaaaatcagataatgataatgatttacagttggaggc |
315 |
Q |
| |
|
||||| ||||||||||| ||||||||||||| | ||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
1608203 |
gttaattaaatgtataacttgtatatttgttgttgtttgggagttgaccctttttccgtatttgaaaatcagataatgataatgacttacagttggaggc |
1608104 |
T |
|
| Q |
316 |
tccgagatatgtggacctt |
334 |
Q |
| |
|
| ||| ||||||||||| |
|
|
| T |
1608103 |
ttagagtgatgtggacctt |
1608085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 19 - 334
Target Start/End: Complemental strand, 20537006 - 20536700
Alignment:
| Q |
19 |
cataattggttggagcccacaaatatctacgaagaacttttgttgccctataagggaggtgatatccggatcatttgtgtcgcatctaggtcaaccttta |
118 |
Q |
| |
|
|||||||||||| ||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| ||||| |
|
|
| T |
20537006 |
cataattggttgaagctcacaaatatctacgaagaacttttgttgccctttaagggaggtgatatccggatcatttgtgtcgcatataggtcaa-cttta |
20536908 |
T |
|
| Q |
119 |
gggtgttgtgcatttgtcgagtccattgttgttttgggtgttgacattttgtgtactttatgttaatatttgtactatttgcatgcctttaaatacatgt |
218 |
Q |
| |
|
||||| | ||||||||||||||| | ||| |||||| ||||| ||||||||| ||||| ||| || ||||||||||||| || ||| ||| |
|
|
| T |
20536907 |
aggtgtcgctcatttgtcgagtccactagtgtcttgggtcttgacgttttgtgtagtttatattattaattgtactatttgcttgactt--------tgt |
20536816 |
T |
|
| Q |
219 |
taaataaatgtataatttgtatatttgtttgtttttgggagttgacc-cttttccgtatttgaaaatcagataatgataatgatttacagttggaggctc |
317 |
Q |
| |
|
||| || |||||||| |||||||||| ||||| ||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
20536815 |
taattatatgtataacttgtatattt-attgttgttgggagttgaccttttttccgtatttgaaaatcagataatgataatgacttacagttggaggctt |
20536717 |
T |
|
| Q |
318 |
cgagatatgtggacctt |
334 |
Q |
| |
|
||| ||||||||||| |
|
|
| T |
20536716 |
agagtgatgtggacctt |
20536700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 184; Significance: 2e-99; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 19 - 336
Target Start/End: Original strand, 29823192 - 29823503
Alignment:
| Q |
19 |
cataattggttggagcccacaaatatctacgaagaacttttgttgccctataagggaggtgatatccggatcatttgtgtcgcatctaggtcaaccttta |
118 |
Q |
| |
|
|||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |
|
|
| T |
29823192 |
cataattggttgaagcccacaattatctacgaagaacttttgttgccctataagggaggtgatatccggatcatttgtgtcgcatataggtcaa-cttta |
29823290 |
T |
|
| Q |
119 |
gggtgttgtgcatttgtcgagtccattgttgttttgggtgttgacattttgtgtactttatgttaatatttgtactatttgcatgcctttaaatacatgt |
218 |
Q |
| |
|
||||| || |||||||||||| || || ||| |||||| |||||| |||||||| ||||| ||| ||||||||||||||| || ||| |||||| | |
|
|
| T |
29823291 |
aggtgtcgttcatttgtcgagttcactgatgtcttgggtcttgaca-tttgtgtagtttatattattatttgtactatttgtttgtcttgaaatacccat |
29823389 |
T |
|
| Q |
219 |
taaataaatgtataatttgtatatttgtttgtttttgggagttgacccttttccgtatttgaaaatcagataatgataatgatttacagttggaggctcc |
318 |
Q |
| |
|
|||||| |||||||| ||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
29823390 |
taaatatatgtataacttg--tatttgtttg--tttgggagttgacccttttccgtatttgaaaatcagataatgataatgacttacagttggaggctcc |
29823485 |
T |
|
| Q |
319 |
gagatatgtggacctttg |
336 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
29823486 |
gagatatgtggacctttg |
29823503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 19 - 331
Target Start/End: Complemental strand, 7097455 - 7097143
Alignment:
| Q |
19 |
cataattggttggagcccacaaatatctacgaagaacttttgttgccctataagggaggtgatatccggatcatttgt-gtcgcatctaggtcaaccttt |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |||||||||||||||||||||| ||||||| |||||| |||| |
|
|
| T |
7097455 |
cataattggttggagcccacaaatatctacgaagaacttttgttgtcctttaagagaggtgatatccggatcatttggagtcgcatataggtcggtcttt |
7097356 |
T |
|
| Q |
118 |
agggtgttgtgcatttgtcgagtccattgttgttttgggtgttgacattttgtgtactttatgttaatatttgtactatttgcatgcctttaaatacatg |
217 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||| || || ||||| ||||||| |||||| || ||| |||| |||| |
|
|
| T |
7097355 |
agggtgttgtgcatttgtcgagtccacatgtgttttgggtgttgacattttgtgtagtt-atattaatttttgtacaatttgcttgtcttgaaattcatg |
7097257 |
T |
|
| Q |
218 |
ttaaataaatgtataatttgtatatttgtttgtttttgggagttgacccttttccgtatttgaaaatcagataatgataatgatttacagttggaggctc |
317 |
Q |
| |
|
|| |||| ||||| || |||||| |||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7097256 |
tttaatatatgtacaacttgtatgtttgttgttgtttgggagttgacccttttccgtatttgaaaatcagataatgataatgatttacagttggaggctt |
7097157 |
T |
|
| Q |
318 |
cgagatatgtggac |
331 |
Q |
| |
|
|||| |||||||| |
|
|
| T |
7097156 |
cgagtgatgtggac |
7097143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 166; E-Value: 8e-89
Query Start/End: Original strand, 19 - 331
Target Start/End: Complemental strand, 7093722 - 7093410
Alignment:
| Q |
19 |
cataattggttggagcccacaaatatctacgaagaacttttgttgccctataagggaggtgatatccggatcatttgt-gtcgcatctaggtcaaccttt |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |||||||||||||||||||||| ||||||| |||||| |||| |
|
|
| T |
7093722 |
cataattggttggagcccacaaatatctacgaagaacttttgttgtcctttaagagaggtgatatccggatcatttggagtcgcatataggtcggtcttt |
7093623 |
T |
|
| Q |
118 |
agggtgttgtgcatttgtcgagtccattgttgttttgggtgttgacattttgtgtactttatgttaatatttgtactatttgcatgcctttaaatacatg |
217 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| |||||||||| |||||||| || || ||||| ||||||| |||||| || ||| |||| |||| |
|
|
| T |
7093622 |
agggtgttgtgcatttgtcgagtccacatgtgtttttggtgttgacactttgtgtagtt-atattaatttttgtacaatttgcttgtcttgaaattcatg |
7093524 |
T |
|
| Q |
218 |
ttaaataaatgtataatttgtatatttgtttgtttttgggagttgacccttttccgtatttgaaaatcagataatgataatgatttacagttggaggctc |
317 |
Q |
| |
|
|| |||| ||||| || |||||| |||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7093523 |
tttaatatatgtacaacttgtatgtttgttgttgtttgggagttgacccttttccgtatttgaaaatcagataatgataatgatttacagttggaggctt |
7093424 |
T |
|
| Q |
318 |
cgagatatgtggac |
331 |
Q |
| |
|
|||| |||||||| |
|
|
| T |
7093423 |
cgagtgatgtggac |
7093410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 19 - 334
Target Start/End: Complemental strand, 451887 - 451573
Alignment:
| Q |
19 |
cataattggttggagcccacaaatatctacgaagaacttttgttgccctataagggaggtgatatccggatcatttgtgtcgcatctaggtcaaccttta |
118 |
Q |
| |
|
|||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| | |||||| | ||||| |
|
|
| T |
451887 |
cataattggttgaagcttacaaatatctacgaagaacttttgttgccctataagggaggtgatatccgattaatttgtgtcgcctataggtc-agcttta |
451789 |
T |
|
| Q |
119 |
gggtgttgtgcatttgtcgagtccattgttgttttgggtgttgacattttgtgtactttatgttaatatttgtactatttgcatgcctttaaatacatgt |
218 |
Q |
| |
|
||||| || ||||||||||||||| || ||| |||||| ||||||||||||||| ||||| ||| || ||||||||||||| || ||| |||||| ||| |
|
|
| T |
451788 |
aggtgtcgttcatttgtcgagtccactggtgtcttgggtcttgacattttgtgtagtttatattatta-ttgtactatttgcttgtcttgaaatacctgt |
451690 |
T |
|
| Q |
219 |
taaataaatgtataatttgtatatttgtttgtttttgggagttgaccc-ttttccgtatttgaaaatcagataatgataatgatttacagttggaggctc |
317 |
Q |
| |
|
|||||| |||||||| ||||||||||||| | |||||||||| |||| |||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
451689 |
taaatatatgtataacttgtatatttgttgttgtttgggagttaaccctttttccgtatttgaaaatcagataatgataatgacttacagttggaggctt |
451590 |
T |
|
| Q |
318 |
cgagatatgtggacctt |
334 |
Q |
| |
|
||| ||||||||||| |
|
|
| T |
451589 |
agagtgatgtggacctt |
451573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 209 - 336
Target Start/End: Complemental strand, 45462520 - 45462392
Alignment:
| Q |
209 |
aaatacatgttaaataaatgtataatttgtatatttgtttgtt-tttgggagttgacccttttccgtatttgaaaatcagataatgataatgatttacag |
307 |
Q |
| |
|
|||||||||||| ||| |||| ||| |||| || || ||| || |||||||||||| |||||||| | ||| ||||||||| |||| | ||||||| | |
|
|
| T |
45462520 |
aaatacatgttatatacatgtgtaagttgtgtaatttttttttgtttgggagttgatccttttccattttttggaatcagatattgatcacgatttacgg |
45462421 |
T |
|
| Q |
308 |
ttggaggctccgagatatgtggacctttg |
336 |
Q |
| |
|
||||||||| || |||||||||||||||| |
|
|
| T |
45462420 |
ttggaggcttcgcgatatgtggacctttg |
45462392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0070 (Bit Score: 171; Significance: 9e-92; HSPs: 1)
Name: scaffold0070
Description:
Target: scaffold0070; HSP #1
Raw Score: 171; E-Value: 9e-92
Query Start/End: Original strand, 19 - 316
Target Start/End: Complemental strand, 58532 - 58235
Alignment:
| Q |
19 |
cataattggttggagcccacaaatatctacgaagaacttttgttgccctataagggaggtgatatccggatcatttgtgtcgcatctaggtcaaccttta |
118 |
Q |
| |
|
|||||||||||| ||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| || |||| | |||| |
|
|
| T |
58532 |
cataattggttgaagctcacaaatatctacgaagaacttttgttgccctacaagggaggtgatatccggatcatttgtgtcgcatatatgtcagc-ttta |
58434 |
T |
|
| Q |
119 |
gggtgttgtgcatttgtcgagtccattgttgttttgggtgttgacattttgtgtactttatgttaatatttgtactatttgcatgcctttaaatacatgt |
218 |
Q |
| |
|
||||| || |||||||||||||||||| ||| |||||| ||||||||||||||| ||||| ||| |||||||||||||| || ||| |||| | ||| |
|
|
| T |
58433 |
aggtgtcgttcatttgtcgagtccattggtgtcttgggtcttgacattttgtgtagtttatattattatttgtactattttattgtcttgaaatgcgtgt |
58334 |
T |
|
| Q |
219 |
taaataaatgtataatttgtatatttgtttgtttttgggagttgaccc-ttttccgtatttgaaaatcagataatgataatgatttacagttggaggct |
316 |
Q |
| |
|
|||||| |||||||| ||||||||||||| | ||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
58333 |
taaatatatgtataacttgtatatttgttgttgtttgggagttgaccctttttccgtatttgaaaatcagataatgataatgacttacagttggaggct |
58235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 162; Significance: 2e-86; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 19 - 331
Target Start/End: Original strand, 8378102 - 8378414
Alignment:
| Q |
19 |
cataattggttggagcccacaaatatctacgaagaacttttgttgccctataagggaggtgatatccggatcatttgt-gtcgcatctaggtcaaccttt |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| ||||||| ||| || |||| |
|
|
| T |
8378102 |
cataattggttggagcccacaaatatctacgaagaacttttgttgtcctttaagggaggtgatatccggatcatttggagtcgcatatagttcggtcttt |
8378201 |
T |
|
| Q |
118 |
agggtgttgtgcatttgtcgagtccattgttgttttgggtgttgacattttgtgtactttatgttaatatttgtactatttgcatgcctttaaatacatg |
217 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||| || || ||||| ||||||| |||||| || ||| |||| |||| |
|
|
| T |
8378202 |
agggtgttgtgcatttgtcgagtccacatgtgttttgggtgttgacattttgtgtagtt-atattaatttttgtacaatttgcttgtcttgaaattcatg |
8378300 |
T |
|
| Q |
218 |
ttaaataaatgtataatttgtatatttgtttgtttttgggagttgacccttttccgtatttgaaaatcagataatgataatgatttacagttggaggctc |
317 |
Q |
| |
|
|| |||| ||||| || |||||| |||||| | | ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
8378301 |
ttcaatatatgtacaacttgtatgtttgttgttgtctgggaattgacccttttccgtatttgaaaatcagataatgataatgacttacagttggaggctt |
8378400 |
T |
|
| Q |
318 |
cgagatatgtggac |
331 |
Q |
| |
|
|||| |||||||| |
|
|
| T |
8378401 |
cgagtgatgtggac |
8378414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0060 (Bit Score: 148; Significance: 5e-78; HSPs: 1)
Name: scaffold0060
Description:
Target: scaffold0060; HSP #1
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 20 - 334
Target Start/End: Original strand, 16951 - 17265
Alignment:
| Q |
20 |
ataattggttggagcccacaaatatctacgaagaacttttgttgccctataagggaggtgatatccggatcatttgtgtcgcatctaggtcaacctttag |
119 |
Q |
| |
|
|||||||| || ||| |||||||||||| ||||||||||||||| ||||||||||||| ||||||||||||||||||||| ||| ||||||||| |||| |
|
|
| T |
16951 |
ataattggctgaagctcacaaatatctatgaagaacttttgttgtcctataagggaggcgatatccggatcatttgtgtcacatataggtcaac-tttaa |
17049 |
T |
|
| Q |
120 |
ggtgttgtgcatttgtcgagtccattgttgttttgggtgttgacattttgtgtactttatgttaatatttgtactatttgcatgcctttaaatacatgtt |
219 |
Q |
| |
|
||||| || ||||||||||||||| | ||| |||||| ||||||||||||||| ||||| ||| |||| ||||||||||| || ||| |||||| |||| |
|
|
| T |
17050 |
ggtgtcgttcatttgtcgagtccactagtgtcttgggtcttgacattttgtgtagtttatattattattcgtactatttgcttgtcttgaaatacctgtt |
17149 |
T |
|
| Q |
220 |
aaataaatgtataatttgtatatttgtttgtttttgggagttga-cccttttccgtatttgaaaatcagataatgataatgatttacagttggaggctcc |
318 |
Q |
| |
|
||||| |||||||| ||||||||||||| | |||||||||||| || |||||||||||||||||| |||| |||||||||| ||||| ||||||||| |
|
|
| T |
17150 |
aaatatatgtataacttgtatatttgttgttgtttgggagttgatcctttttccgtatttgaaaattagatgatgataatgacttacatttggaggctta |
17249 |
T |
|
| Q |
319 |
gagatatgtggacctt |
334 |
Q |
| |
|
||| ||||||||||| |
|
|
| T |
17250 |
gagtgatgtggacctt |
17265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold2006 (Bit Score: 133; Significance: 4e-69; HSPs: 1)
Name: scaffold2006
Description:
Target: scaffold2006; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 169 - 336
Target Start/End: Complemental strand, 1167 - 1002
Alignment:
| Q |
169 |
gtgtactttatgttaatatttgtactatttgcatgcctttaaatacatgttaaataaatgtataatttgtatatttgtttgtttttgggagttgaccctt |
268 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| ||||||||||| |
|
|
| T |
1167 |
gtgtactttatattaatatttgtactatttgcatgcctttaaatacatgttaaataaatgtataacttgtatatttgtttg--tttggtagttgaccctt |
1070 |
T |
|
| Q |
269 |
ttccgtatttgaaaatcagataatgataatgatttacagttggaggctccgagatatgtggacctttg |
336 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| |||||||| |
|
|
| T |
1069 |
ttccgtatttgaaaatcagataatgataatgacttacggttggaggctccgagatatgttgacctttg |
1002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 119; Significance: 9e-61; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 19 - 333
Target Start/End: Complemental strand, 11991693 - 11991371
Alignment:
| Q |
19 |
cataattggttggagcccacaaatatctacgaagaacttttg-ttgccctataagggaggtgatatccggatcatttgtgtcgcatctaggtcaaccttt |
117 |
Q |
| |
|
|||||||||||| | |||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||| |||||| ||||| || | || |
|
|
| T |
11991693 |
cataattggttgaaccccacaaatatctacgaagaactttttattgccctataagggagatgatatccggatcatttgtatcgcatataggttaatcctt |
11991594 |
T |
|
| Q |
118 |
agggtgttgtgcatttgtcgagtccattgttgttttgggtgttgacattttgtgtactttatgttaatatttgtactatttgcatgcctttaaata---- |
213 |
Q |
| |
|
||||||| |||||||||||||||||| || ||||| ||||||||| ||||| ||||| |||| |||||| || || | ||| ||| || ||||| |
|
|
| T |
11991593 |
agggtgtcgtgcatttgtcgagtccactggtgtttggggtgttgatattttatgtaccttatattaataattatattgttttaatggtttaaaatacatg |
11991494 |
T |
|
| Q |
214 |
catgttaaata--aatgtataatttgtatatttgtttgtttttgggagttgaccc-ttttccgtatttgaaaatcagataatgataatgatttacagttg |
310 |
Q |
| |
|
||||||||||| |||| ||| |||||| |||||| | ||||||||||||||| |||||||||||| ||||| ||||||||||| |||||||||||| |
|
|
| T |
11991493 |
catgttaaatatctatgtgtaacttgtatgtttgttgttgtttgggagttgaccctttttccgtattttaaaattagataatgatatcgatttacagttg |
11991394 |
T |
|
| Q |
311 |
gaggctccgagatatgtggacct |
333 |
Q |
| |
|
|| ||| ||||| |||||||||| |
|
|
| T |
11991393 |
gaagcttcgagagatgtggacct |
11991371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 226 - 336
Target Start/End: Original strand, 639393 - 639503
Alignment:
| Q |
226 |
atgtataatttgtatatttgtttgtttttgggagttgacccttttccgtatttgaaaatcagataatgataatgatttacagttggaggctccgagatat |
325 |
Q |
| |
|
|||||||| |||||||||||| | |||||||||| || ||||||||||||||||||||||||| ||||| || |||| ||| |||||| |||||||| |
|
|
| T |
639393 |
atgtataagctgtatatttgttgttgtttgggagttaccctttttccgtatttgaaaatcagataaagataacgacttacggtttgaggcttcgagatat |
639492 |
T |
|
| Q |
326 |
gtggacctttg |
336 |
Q |
| |
|
||||||||||| |
|
|
| T |
639493 |
gtggacctttg |
639503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 38 - 195
Target Start/End: Original strand, 639146 - 639307
Alignment:
| Q |
38 |
caaatatctacgaagaacttttgttgccctataagggaggtgatatccggatcatttg-tgtcgcatctaggtcaacctttagggt-gttgtgcatttgt |
135 |
Q |
| |
|
|||||||||| ||||||||| |||| | ||| |||||||||||||||| ||||||||| | |||| |||||| ||||||||| || |||||||||| |
|
|
| T |
639146 |
caaatatctaggaagaacttatgtttctctaaaagggaggtgatatccagatcatttgcattggcatataggtcgttctttagggtggtcgtgcatttgt |
639245 |
T |
|
| Q |
136 |
cgagtcca-ttgttgtt-ttgggtgttgacattttgtgtactttatgttaatatttgtacta |
195 |
Q |
| |
|
||||| | || ||||| || || |||||||||||||||||| || ||||||||||||||| |
|
|
| T |
639246 |
tgagtcaacttcttgttaatgagttttgacattttgtgtacttcattttaatatttgtacta |
639307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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