View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20661_high_11 (Length: 396)

Name: NF20661_high_11
Description: NF20661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20661_high_11
NF20661_high_11
[»] chr1 (22 HSPs)
chr1 (259-374)||(27218559-27218674)
chr1 (270-380)||(27212516-27212626)
chr1 (103-145)||(40139121-40139163)
chr1 (112-147)||(18610777-18610812)
chr1 (112-147)||(31184285-31184320)
chr1 (103-146)||(48634357-48634400)
chr1 (112-146)||(11947799-11947833)
chr1 (112-146)||(24265611-24265645)
chr1 (112-146)||(34395952-34395986)
chr1 (107-149)||(46947980-46948022)
chr1 (116-149)||(8934626-8934659)
chr1 (112-149)||(9882689-9882726)
chr1 (112-149)||(15182613-15182650)
chr1 (112-145)||(29293963-29293996)
chr1 (112-149)||(29877191-29877228)
chr1 (112-145)||(43612103-43612136)
chr1 (112-149)||(48576535-48576572)
chr1 (112-149)||(50017453-50017490)
chr1 (103-147)||(30530431-30530475)
chr1 (106-146)||(41459773-41459812)
chr1 (105-145)||(48872051-48872091)
chr1 (105-145)||(50035423-50035463)
[»] chr2 (20 HSPs)
chr2 (105-146)||(43621981-43622022)
chr2 (107-145)||(11548069-11548107)
chr2 (106-146)||(14255300-14255340)
chr2 (112-147)||(8087375-8087410)
chr2 (103-146)||(14713981-14714024)
chr2 (107-146)||(22303202-22303241)
chr2 (112-143)||(36175747-36175778)
chr2 (112-146)||(3299138-3299172)
chr2 (108-146)||(28508479-28508517)
chr2 (112-149)||(3091745-3091782)
chr2 (112-149)||(7498021-7498058)
chr2 (112-149)||(14140367-14140404)
chr2 (112-145)||(15141477-15141510)
chr2 (112-145)||(25086339-25086372)
chr2 (105-146)||(31629601-31629642)
chr2 (106-146)||(15123969-15124009)
chr2 (109-137)||(26672869-26672897)
chr2 (106-146)||(28277800-28277840)
chr2 (105-149)||(36816446-36816490)
chr2 (112-148)||(44189831-44189867)
[»] chr7 (19 HSPs)
chr7 (104-146)||(26153642-26153684)
chr7 (103-146)||(37355274-37355317)
chr7 (112-146)||(22692088-22692122)
chr7 (112-146)||(30818030-30818064)
chr7 (112-146)||(37385266-37385300)
chr7 (112-146)||(40693561-40693595)
chr7 (112-149)||(1789995-1790032)
chr7 (105-146)||(1814340-1814381)
chr7 (112-145)||(2323308-2323341)
chr7 (112-149)||(19426584-19426621)
chr7 (112-145)||(23680061-23680094)
chr7 (112-149)||(31436423-31436460)
chr7 (112-145)||(38547313-38547346)
chr7 (112-149)||(42640847-42640884)
chr7 (112-145)||(43171207-43171240)
chr7 (112-145)||(49025337-49025370)
chr7 (107-147)||(8742393-8742433)
chr7 (106-146)||(22638917-22638957)
chr7 (106-146)||(33050181-33050221)
[»] chr8 (14 HSPs)
chr8 (103-146)||(9985711-9985754)
chr8 (103-149)||(33415741-33415787)
chr8 (106-146)||(14531619-14531659)
chr8 (108-146)||(33511746-33511784)
chr8 (112-146)||(36497665-36497699)
chr8 (112-146)||(40380285-40380319)
chr8 (112-149)||(6161952-6161989)
chr8 (112-145)||(11138911-11138944)
chr8 (101-146)||(13592759-13592804)
chr8 (104-145)||(31731457-31731498)
chr8 (105-146)||(38844823-38844864)
chr8 (106-146)||(11097154-11097194)
chr8 (113-145)||(34037520-34037552)
chr8 (105-149)||(43873721-43873765)
[»] chr3 (23 HSPs)
chr3 (106-149)||(19418187-19418230)
chr3 (107-147)||(37134638-37134678)
chr3 (103-146)||(1402645-1402688)
chr3 (112-146)||(7867744-7867778)
chr3 (112-146)||(45528975-45529009)
chr3 (108-146)||(47683935-47683973)
chr3 (112-146)||(50559245-50559279)
chr3 (112-146)||(50652392-50652426)
chr3 (106-147)||(12094421-12094462)
chr3 (109-142)||(31366811-31366844)
chr3 (112-149)||(40159868-40159905)
chr3 (112-149)||(46315985-46316022)
chr3 (112-149)||(47988515-47988552)
chr3 (112-149)||(47997802-47997839)
chr3 (112-149)||(48007089-48007126)
chr3 (106-146)||(462434-462474)
chr3 (106-146)||(1295330-1295370)
chr3 (106-146)||(6178459-6178498)
chr3 (106-146)||(11327106-11327146)
chr3 (105-145)||(30580130-30580170)
chr3 (114-146)||(41637313-41637345)
chr3 (107-147)||(45205287-45205327)
chr3 (109-145)||(49031436-49031472)
[»] chr5 (13 HSPs)
chr5 (108-146)||(3154676-3154714)
chr5 (106-149)||(42699055-42699098)
chr5 (112-146)||(29803229-29803263)
chr5 (107-149)||(31708369-31708411)
chr5 (112-146)||(34428164-34428198)
chr5 (112-149)||(125096-125133)
chr5 (112-145)||(4098627-4098660)
chr5 (112-149)||(8897386-8897423)
chr5 (112-145)||(9065435-9065468)
chr5 (105-134)||(14716110-14716139)
chr5 (112-149)||(36572695-36572732)
chr5 (107-147)||(19983840-19983880)
chr5 (105-149)||(39595269-39595313)
[»] chr4 (28 HSPs)
chr4 (112-146)||(52430881-52430915)
chr4 (106-146)||(3475867-3475907)
chr4 (105-145)||(45764422-45764462)
chr4 (112-147)||(11012145-11012180)
chr4 (106-145)||(15515793-15515832)
chr4 (112-147)||(35017157-35017192)
chr4 (106-149)||(51039146-51039189)
chr4 (112-146)||(24088597-24088631)
chr4 (107-149)||(24772670-24772712)
chr4 (107-149)||(25523228-25523270)
chr4 (108-146)||(37775460-37775498)
chr4 (107-149)||(39010167-39010209)
chr4 (112-146)||(42853943-42853977)
chr4 (112-146)||(44272843-44272877)
chr4 (112-146)||(47014943-47014977)
chr4 (108-146)||(49371083-49371121)
chr4 (110-144)||(50304858-50304892)
chr4 (112-149)||(169532-169569)
chr4 (112-149)||(12074181-12074218)
chr4 (112-149)||(12241062-12241099)
chr4 (112-149)||(12694458-12694495)
chr4 (112-149)||(29525862-29525899)
chr4 (112-145)||(33093138-33093171)
chr4 (112-149)||(33820366-33820403)
chr4 (112-149)||(34114147-34114184)
chr4 (105-146)||(40090828-40090869)
chr4 (116-149)||(52632164-52632197)
chr4 (105-145)||(4974108-4974148)
[»] scaffold0002 (2 HSPs)
scaffold0002 (104-149)||(6423-6468)
scaffold0002 (105-146)||(440715-440756)
[»] chr6 (10 HSPs)
chr6 (106-145)||(32644621-32644660)
chr6 (112-146)||(27334862-27334896)
chr6 (112-146)||(27395602-27395636)
chr6 (112-149)||(19789106-19789143)
chr6 (112-149)||(21506340-21506377)
chr6 (104-149)||(28647465-28647510)
chr6 (116-145)||(29467373-29467402)
chr6 (106-146)||(12280438-12280478)
chr6 (105-141)||(21857605-21857641)
chr6 (106-146)||(28670583-28670623)
[»] scaffold0662 (1 HSPs)
scaffold0662 (112-146)||(1082-1116)
[»] scaffold0154 (2 HSPs)
scaffold0154 (112-146)||(19724-19758)
scaffold0154 (112-149)||(4319-4356)
[»] scaffold0020 (1 HSPs)
scaffold0020 (107-149)||(155905-155947)
[»] scaffold0041 (1 HSPs)
scaffold0041 (112-145)||(34412-34445)
[»] scaffold0024 (1 HSPs)
scaffold0024 (112-149)||(60473-60510)


Alignment Details
Target: chr1 (Bit Score: 84; Significance: 8e-40; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 259 - 374
Target Start/End: Complemental strand, 27218674 - 27218559
Alignment:
Q  259 aatggaagtcaaaaaccctctcttttgtaggaaggattactttagctaaatcagttatccaagcaattcctacatatattttgcaatcaatgttgttgcc 358  Q
    ||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||| || |||||||||| |||||  |    
T  27218674 aatggaagtcaaaaaccttctcttttgtaggaaggattattttagctaaatcagttatccaagcaatttctacatatgttatgcaatcaattttgttatc 27218575  T
Q  359 tatgcatatttgtgat 374  Q
    ||||||||||||||||    
T  27218574 tatgcatatttgtgat 27218559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 270 - 380
Target Start/End: Complemental strand, 27212626 - 27212516
Alignment:
Q  270 aaaaccctctcttttgtaggaaggattactttagctaaatcagttatccaagcaattcctacatatattttgcaatcaatgttgttgcctatgcatattt 369  Q
    |||| ||||||||||||| ||||| |||||||||||||||||||||||||||||||||| || ||| || ||||||||||||||||| ||||||||||||    
T  27212626 aaaaacctctcttttgtatgaaggcttactttagctaaatcagttatccaagcaattccaacttatgttatgcaatcaatgttgttgtctatgcatattt 27212527  T
Q  370 gtgatgaaata 380  Q
    |||||| ||||    
T  27212526 gtgatggaata 27212516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 103 - 145
Target Start/End: Original strand, 40139121 - 40139163
Alignment:
Q  103 aatatgagtaatgatatttgtacaactattttatgacaacttt 145  Q
    |||||||| ||||||||||||||||| ||||||||||||||||    
T  40139121 aatatgagaaatgatatttgtacaaccattttatgacaacttt 40139163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 112 - 147
Target Start/End: Original strand, 18610777 - 18610812
Alignment:
Q  112 aatgatatttgtacaactattttatgacaacttttt 147  Q
    ||||||||||||||||||||||| ||||||||||||    
T  18610777 aatgatatttgtacaactattttgtgacaacttttt 18610812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 112 - 147
Target Start/End: Original strand, 31184285 - 31184320
Alignment:
Q  112 aatgatatttgtacaactattttatgacaacttttt 147  Q
    ||||||||||||||||| ||||||||||||||||||    
T  31184285 aatgatatttgtacaaccattttatgacaacttttt 31184320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 103 - 146
Target Start/End: Original strand, 48634357 - 48634400
Alignment:
Q  103 aatatgagtaatgatatttgtacaactattttatgacaactttt 146  Q
    ||||||||| ||||||| |||||||||||||| |||||||||||    
T  48634357 aatatgagtgatgatatctgtacaactattttgtgacaactttt 48634400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 112 - 146
Target Start/End: Original strand, 11947799 - 11947833
Alignment:
Q  112 aatgatatttgtacaactattttatgacaactttt 146  Q
    ||||||||||||||||| |||||||||||||||||    
T  11947799 aatgatatttgtacaaccattttatgacaactttt 11947833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 112 - 146
Target Start/End: Complemental strand, 24265645 - 24265611
Alignment:
Q  112 aatgatatttgtacaactattttatgacaactttt 146  Q
    |||||||||||||||| ||||||||||||||||||    
T  24265645 aatgatatttgtacaattattttatgacaactttt 24265611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 112 - 146
Target Start/End: Complemental strand, 34395986 - 34395952
Alignment:
Q  112 aatgatatttgtacaactattttatgacaactttt 146  Q
    ||||||||||||||| |||||||||||||||||||    
T  34395986 aatgatatttgtacatctattttatgacaactttt 34395952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 107 - 149
Target Start/End: Original strand, 46947980 - 46948022
Alignment:
Q  107 tgagtaatgatatttgtacaactattttatgacaactttttga 149  Q
    |||| ||||||||||||||| | ||||||||||||||||||||    
T  46947980 tgagaaatgatatttgtacatccattttatgacaactttttga 46948022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 116 - 149
Target Start/End: Complemental strand, 8934659 - 8934626
Alignment:
Q  116 atatttgtacaactattttatgacaactttttga 149  Q
    ||||||||||||||||||| ||||||||||||||    
T  8934659 atatttgtacaactattttgtgacaactttttga 8934626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 149
Target Start/End: Complemental strand, 9882726 - 9882689
Alignment:
Q  112 aatgatatttgtacaactattttatgacaactttttga 149  Q
    ||||||||||||||||||||||| ||||||| ||||||    
T  9882726 aatgatatttgtacaactattttgtgacaacattttga 9882689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 149
Target Start/End: Complemental strand, 15182650 - 15182613
Alignment:
Q  112 aatgatatttgtacaactattttatgacaactttttga 149  Q
    ||||||||||||||||||||||| | ||||||||||||    
T  15182650 aatgatatttgtacaactattttctaacaactttttga 15182613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 145
Target Start/End: Original strand, 29293963 - 29293996
Alignment:
Q  112 aatgatatttgtacaactattttatgacaacttt 145  Q
    ||||||||||||||||||| ||||||||||||||    
T  29293963 aatgatatttgtacaactactttatgacaacttt 29293996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 149
Target Start/End: Complemental strand, 29877228 - 29877191
Alignment:
Q  112 aatgatatttgtacaactattttatgacaactttttga 149  Q
    ||||||||||||||||||||||| |||||| |||||||    
T  29877228 aatgatatttgtacaactattttttgacaaatttttga 29877191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 145
Target Start/End: Complemental strand, 43612136 - 43612103
Alignment:
Q  112 aatgatatttgtacaactattttatgacaacttt 145  Q
    ||||||||||||||||| ||||||||||||||||    
T  43612136 aatgatatttgtacaaccattttatgacaacttt 43612103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 149
Target Start/End: Complemental strand, 48576572 - 48576535
Alignment:
Q  112 aatgatatttgtacaactattttatgacaactttttga 149  Q
    ||||||||||||| ||| ||||||||||||||||||||    
T  48576572 aatgatatttgtataaccattttatgacaactttttga 48576535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 149
Target Start/End: Complemental strand, 50017490 - 50017453
Alignment:
Q  112 aatgatatttgtacaactattttatgacaactttttga 149  Q
    ||||||||||||||||| ||||||| ||||||||||||    
T  50017490 aatgatatttgtacaacaattttattacaactttttga 50017453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 103 - 147
Target Start/End: Complemental strand, 30530475 - 30530431
Alignment:
Q  103 aatatgagtaatgatatttgtacaactattttatgacaacttttt 147  Q
    |||||||| ||||||||||||||||| | ||||| ||||||||||    
T  30530475 aatatgagaaatgatatttgtacaaccactttattacaacttttt 30530431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 106 - 146
Target Start/End: Complemental strand, 41459812 - 41459773
Alignment:
Q  106 atgagtaatgatatttgtacaactattttatgacaactttt 146  Q
    ||||||||| |||||||| ||||||||||||||||||||||    
T  41459812 atgagtaat-atatttgttcaactattttatgacaactttt 41459773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 105 - 145
Target Start/End: Complemental strand, 48872091 - 48872051
Alignment:
Q  105 tatgagtaatgatatttgtacaactattttatgacaacttt 145  Q
    |||||| ||||||||||||||||| ||||| ||||||||||    
T  48872091 tatgagaaatgatatttgtacaaccattttttgacaacttt 48872051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 105 - 145
Target Start/End: Original strand, 50035423 - 50035463
Alignment:
Q  105 tatgagtaatgatatttgtacaactattttatgacaacttt 145  Q
    |||||| ||||||||||||||| |||||| |||||||||||    
T  50035423 tatgagcaatgatatttgtacatctatttcatgacaacttt 50035463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 105 - 146
Target Start/End: Complemental strand, 43622022 - 43621981
Alignment:
Q  105 tatgagtaatgatatttgtacaactattttatgacaactttt 146  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  43622022 tatgagtaatgatatttgtacaactattttatgacaactttt 43621981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 107 - 145
Target Start/End: Complemental strand, 11548107 - 11548069
Alignment:
Q  107 tgagtaatgatatttgtacaactattttatgacaacttt 145  Q
    ||||||||||||||||||||| |||||||||||||||||    
T  11548107 tgagtaatgatatttgtacaattattttatgacaacttt 11548069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 106 - 146
Target Start/End: Original strand, 14255300 - 14255340
Alignment:
Q  106 atgagtaatgatatttgtacaactattttatgacaactttt 146  Q
    ||||| ||| |||||||||||||||||||||||||||||||    
T  14255300 atgagaaataatatttgtacaactattttatgacaactttt 14255340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 112 - 147
Target Start/End: Original strand, 8087375 - 8087410
Alignment:
Q  112 aatgatatttgtacaactattttatgacaacttttt 147  Q
    |||||||||||||||| |||||||||||||||||||    
T  8087375 aatgatatttgtacaattattttatgacaacttttt 8087410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 103 - 146
Target Start/End: Original strand, 14713981 - 14714024
Alignment:
Q  103 aatatgagtaatgatatttgtacaactattttatgacaactttt 146  Q
    |||||||| ||||||||||||||| | |||||||||||||||||    
T  14713981 aatatgagaaatgatatttgtacatcaattttatgacaactttt 14714024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 107 - 146
Target Start/End: Original strand, 22303202 - 22303241
Alignment:
Q  107 tgagtaatgatatttgtacaactattttatgacaactttt 146  Q
    |||| ||||||||||||||||||||||| |||||||||||    
T  22303202 tgagaaatgatatttgtacaactattttttgacaactttt 22303241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 112 - 143
Target Start/End: Original strand, 36175747 - 36175778
Alignment:
Q  112 aatgatatttgtacaactattttatgacaact 143  Q
    ||||||||||||||||||||||||||||||||    
T  36175747 aatgatatttgtacaactattttatgacaact 36175778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 112 - 146
Target Start/End: Complemental strand, 3299172 - 3299138
Alignment:
Q  112 aatgatatttgtacaactattttatgacaactttt 146  Q
    ||||||||||||||||| |||||||||||||||||    
T  3299172 aatgatatttgtacaaccattttatgacaactttt 3299138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 108 - 146
Target Start/End: Original strand, 28508479 - 28508517
Alignment:
Q  108 gagtaatgatatttgtacaactattttatgacaactttt 146  Q
    ||||||||||||||||||||| ||||| |||||||||||    
T  28508479 gagtaatgatatttgtacaaccattttgtgacaactttt 28508517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 149
Target Start/End: Original strand, 3091745 - 3091782
Alignment:
Q  112 aatgatatttgtacaactattttatgacaactttttga 149  Q
    ||||||||||||||||||||||| ||| ||||||||||    
T  3091745 aatgatatttgtacaactattttgtgataactttttga 3091782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 149
Target Start/End: Complemental strand, 7498058 - 7498021
Alignment:
Q  112 aatgatatttgtacaactattttatgacaactttttga 149  Q
    ||||||||||||||||| ||||||| ||||||||||||    
T  7498058 aatgatatttgtacaaccattttattacaactttttga 7498021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 149
Target Start/End: Complemental strand, 14140404 - 14140367
Alignment:
Q  112 aatgatatttgtacaactattttatgacaactttttga 149  Q
    ||||||||||||||||||| ||| ||||||||||||||    
T  14140404 aatgatatttgtacaactaatttgtgacaactttttga 14140367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 145
Target Start/End: Original strand, 15141477 - 15141510
Alignment:
Q  112 aatgatatttgtacaactattttatgacaacttt 145  Q
    ||||||||||||||| ||||||||||||||||||    
T  15141477 aatgatatttgtacatctattttatgacaacttt 15141510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 145
Target Start/End: Original strand, 25086339 - 25086372
Alignment:
Q  112 aatgatatttgtacaactattttatgacaacttt 145  Q
    ||||||||||||||||| ||||||||||||||||    
T  25086339 aatgatatttgtacaacaattttatgacaacttt 25086372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 105 - 146
Target Start/End: Original strand, 31629601 - 31629642
Alignment:
Q  105 tatgagtaatgatatttgtacaactattttatgacaactttt 146  Q
    |||||| ||||||||||||||||||| ||| |||||||||||    
T  31629601 tatgagaaatgatatttgtacaactactttttgacaactttt 31629642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 106 - 146
Target Start/End: Complemental strand, 15124009 - 15123969
Alignment:
Q  106 atgagtaatgatatttgtacaactattttatgacaactttt 146  Q
    ||||| ||||||||||||||||| ||||| |||||||||||    
T  15124009 atgagaaatgatatttgtacaaccattttttgacaactttt 15123969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 109 - 137
Target Start/End: Complemental strand, 26672897 - 26672869
Alignment:
Q  109 agtaatgatatttgtacaactattttatg 137  Q
    |||||||||||||||||||||||||||||    
T  26672897 agtaatgatatttgtacaactattttatg 26672869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 106 - 146
Target Start/End: Complemental strand, 28277840 - 28277800
Alignment:
Q  106 atgagtaatgatatttgtacaactattttatgacaactttt 146  Q
    ||||| |||||||||| |||||||||||| |||||||||||    
T  28277840 atgagaaatgatatttatacaactattttctgacaactttt 28277800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 105 - 149
Target Start/End: Complemental strand, 36816490 - 36816446
Alignment:
Q  105 tatgagtaatgatatttgtacaactattttatgacaactttttga 149  Q
    |||||| |||||||||| |||||||||||||||| || |||||||    
T  36816490 tatgagaaatgatatttatacaactattttatgataattttttga 36816446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 112 - 148
Target Start/End: Original strand, 44189831 - 44189867
Alignment:
Q  112 aatgatatttgtacaactattttatgacaactttttg 148  Q
    ||||||||||||||||| | |||||||||||||||||    
T  44189831 aatgatatttgtacaaccactttatgacaactttttg 44189867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 104 - 146
Target Start/End: Original strand, 26153642 - 26153684
Alignment:
Q  104 atatgagtaatgatatttgtacaactattttatgacaactttt 146  Q
    ||||||| |||||||||||||||||||||||||||||||||||    
T  26153642 atatgagaaatgatatttgtacaactattttatgacaactttt 26153684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 103 - 146
Target Start/End: Complemental strand, 37355317 - 37355274
Alignment:
Q  103 aatatgagtaatgatatttgtacaactattttatgacaactttt 146  Q
    ||||||||||||| ||||||||||||||||||  ||||||||||    
T  37355317 aatatgagtaatggtatttgtacaactattttgagacaactttt 37355274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 112 - 146
Target Start/End: Original strand, 22692088 - 22692122
Alignment:
Q  112 aatgatatttgtacaactattttatgacaactttt 146  Q
    ||||||||||||||||| |||||||||||||||||    
T  22692088 aatgatatttgtacaaccattttatgacaactttt 22692122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 112 - 146
Target Start/End: Complemental strand, 30818064 - 30818030
Alignment:
Q  112 aatgatatttgtacaactattttatgacaactttt 146  Q
    ||||||||||||||||| |||||||||||||||||    
T  30818064 aatgatatttgtacaaccattttatgacaactttt 30818030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 112 - 146
Target Start/End: Complemental strand, 37385300 - 37385266
Alignment:
Q  112 aatgatatttgtacaactattttatgacaactttt 146  Q
    ||||||||||||||||||||||| |||||||||||    
T  37385300 aatgatatttgtacaactattttttgacaactttt 37385266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 112 - 146
Target Start/End: Complemental strand, 40693595 - 40693561
Alignment:
Q  112 aatgatatttgtacaactattttatgacaactttt 146  Q
    ||||||||||||||||||||||| |||||||||||    
T  40693595 aatgatatttgtacaactattttttgacaactttt 40693561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 149
Target Start/End: Original strand, 1789995 - 1790032
Alignment:
Q  112 aatgatatttgtacaactattttatgacaactttttga 149  Q
    |||||||||||||||||||||||  |||||||||||||    
T  1789995 aatgatatttgtacaactattttgcgacaactttttga 1790032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 105 - 146
Target Start/End: Complemental strand, 1814381 - 1814340
Alignment:
Q  105 tatgagtaatgatatttgtacaactattttatgacaactttt 146  Q
    |||||| |||||||||||||||||||||||  ||||||||||    
T  1814381 tatgagaaatgatatttgtacaactattttgcgacaactttt 1814340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 145
Target Start/End: Original strand, 2323308 - 2323341
Alignment:
Q  112 aatgatatttgtacaactattttatgacaacttt 145  Q
    ||||||||||||||||| ||||||||||||||||    
T  2323308 aatgatatttgtacaacaattttatgacaacttt 2323341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 149
Target Start/End: Original strand, 19426584 - 19426621
Alignment:
Q  112 aatgatatttgtacaactattttatgacaactttttga 149  Q
    ||||||||||||||||| ||||| ||||||||||||||    
T  19426584 aatgatatttgtacaaccattttgtgacaactttttga 19426621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 145
Target Start/End: Complemental strand, 23680094 - 23680061
Alignment:
Q  112 aatgatatttgtacaactattttatgacaacttt 145  Q
    ||||||||||||||||||||||| ||||||||||    
T  23680094 aatgatatttgtacaactattttgtgacaacttt 23680061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 149
Target Start/End: Original strand, 31436423 - 31436460
Alignment:
Q  112 aatgatatttgtacaactattttatgacaactttttga 149  Q
    ||||||||||||||||| ||||| ||||||||||||||    
T  31436423 aatgatatttgtacaaccattttttgacaactttttga 31436460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 145
Target Start/End: Complemental strand, 38547346 - 38547313
Alignment:
Q  112 aatgatatttgtacaactattttatgacaacttt 145  Q
    ||||||||||||||||||||||| ||||||||||    
T  38547346 aatgatatttgtacaactattttttgacaacttt 38547313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 149
Target Start/End: Original strand, 42640847 - 42640884
Alignment:
Q  112 aatgatatttgtacaactattttatgacaactttttga 149  Q
    ||||||||||||||||||||||| | ||||||||||||    
T  42640847 aatgatatttgtacaactattttctaacaactttttga 42640884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 145
Target Start/End: Complemental strand, 43171240 - 43171207
Alignment:
Q  112 aatgatatttgtacaactattttatgacaacttt 145  Q
    ||||||||||||||||| ||||||||||||||||    
T  43171240 aatgatatttgtacaaccattttatgacaacttt 43171207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 145
Target Start/End: Complemental strand, 49025370 - 49025337
Alignment:
Q  112 aatgatatttgtacaactattttatgacaacttt 145  Q
    |||||||||||||||| |||||||||||||||||    
T  49025370 aatgatatttgtacaattattttatgacaacttt 49025337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 107 - 147
Target Start/End: Original strand, 8742393 - 8742433
Alignment:
Q  107 tgagtaatgatatttgtacaactattttatgacaacttttt 147  Q
    |||| |||||||||||||||||||| || ||||||||||||    
T  8742393 tgagaaatgatatttgtacaactatgttttgacaacttttt 8742433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 106 - 146
Target Start/End: Complemental strand, 22638957 - 22638917
Alignment:
Q  106 atgagtaatgatatttgtacaactattttatgacaactttt 146  Q
    ||||| ||||||||||| ||| |||||||||||||||||||    
T  22638957 atgagaaatgatatttgaacatctattttatgacaactttt 22638917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 106 - 146
Target Start/End: Original strand, 33050181 - 33050221
Alignment:
Q  106 atgagtaatgatatttgtacaactattttatgacaactttt 146  Q
    ||||| ||||||||||||||||| ||||| |||||||||||    
T  33050181 atgagaaatgatatttgtacaaccattttgtgacaactttt 33050221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 103 - 146
Target Start/End: Complemental strand, 9985754 - 9985711
Alignment:
Q  103 aatatgagtaatgatatttgtacaactattttatgacaactttt 146  Q
    |||||||| ||||||||||||||| |||||||||||||||||||    
T  9985754 aatatgagaaatgatatttgtacatctattttatgacaactttt 9985711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 103 - 149
Target Start/End: Complemental strand, 33415787 - 33415741
Alignment:
Q  103 aatatgagtaatgatatttgtacaactattttatgacaactttttga 149  Q
    |||||||| ||| |||||||||||||||||||||||||||| |||||    
T  33415787 aatatgagaaataatatttgtacaactattttatgacaactctttga 33415741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 106 - 146
Target Start/End: Original strand, 14531619 - 14531659
Alignment:
Q  106 atgagtaatgatatttgtacaactattttatgacaactttt 146  Q
    ||||| ||||||||||||||||||||||||||| |||||||    
T  14531619 atgagaaatgatatttgtacaactattttatgataactttt 14531659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 108 - 146
Target Start/End: Complemental strand, 33511784 - 33511746
Alignment:
Q  108 gagtaatgatatttgtacaactattttatgacaactttt 146  Q
    ||||||||||||||||||||||||||| ||| |||||||    
T  33511784 gagtaatgatatttgtacaactattttgtgaaaactttt 33511746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 112 - 146
Target Start/End: Original strand, 36497665 - 36497699
Alignment:
Q  112 aatgatatttgtacaactattttatgacaactttt 146  Q
    ||||||||||||||||||||||| |||||||||||    
T  36497665 aatgatatttgtacaactattttgtgacaactttt 36497699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 112 - 146
Target Start/End: Original strand, 40380285 - 40380319
Alignment:
Q  112 aatgatatttgtacaactattttatgacaactttt 146  Q
    ||||||||||||||| |||||||||||||||||||    
T  40380285 aatgatatttgtacatctattttatgacaactttt 40380319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 149
Target Start/End: Original strand, 6161952 - 6161989
Alignment:
Q  112 aatgatatttgtacaactattttatgacaactttttga 149  Q
    ||||||||||||||||| ||||||||||||| ||||||    
T  6161952 aatgatatttgtacaaccattttatgacaaccttttga 6161989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 145
Target Start/End: Original strand, 11138911 - 11138944
Alignment:
Q  112 aatgatatttgtacaactattttatgacaacttt 145  Q
    ||||||||||||||||||||||| ||||||||||    
T  11138911 aatgatatttgtacaactattttgtgacaacttt 11138944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 101 - 146
Target Start/End: Original strand, 13592759 - 13592804
Alignment:
Q  101 tgaatatgagtaatgatatttgtacaactattttatgacaactttt 146  Q
    |||||| ||| ||||||||||||||| ||||||| |||||||||||    
T  13592759 tgaataagagaaatgatatttgtacacctattttttgacaactttt 13592804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 104 - 145
Target Start/End: Complemental strand, 31731498 - 31731457
Alignment:
Q  104 atatgagtaatgatatttgtacaactattttatgacaacttt 145  Q
    ||||||| |||||||||| |||||||| ||||||||||||||    
T  31731498 atatgagaaatgatatttatacaactaatttatgacaacttt 31731457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 105 - 146
Target Start/End: Complemental strand, 38844864 - 38844823
Alignment:
Q  105 tatgagtaatgatatttgtacaactattttatgacaactttt 146  Q
    |||||| ||||||||||||||||| ||||| |||||||||||    
T  38844864 tatgagaaatgatatttgtacaaccattttgtgacaactttt 38844823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 106 - 146
Target Start/End: Complemental strand, 11097194 - 11097154
Alignment:
Q  106 atgagtaatgatatttgtacaactattttatgacaactttt 146  Q
    ||||||||||||||||||||||| ||||  |||||||||||    
T  11097194 atgagtaatgatatttgtacaaccatttagtgacaactttt 11097154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 113 - 145
Target Start/End: Complemental strand, 34037552 - 34037520
Alignment:
Q  113 atgatatttgtacaactattttatgacaacttt 145  Q
    |||||||||||||||||||||||||| ||||||    
T  34037552 atgatatttgtacaactattttatgataacttt 34037520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 105 - 149
Target Start/End: Complemental strand, 43873765 - 43873721
Alignment:
Q  105 tatgagtaatgatatttgtacaactattttatgacaactttttga 149  Q
    |||||| ||||||||||||||||| ||||| |||||| |||||||    
T  43873765 tatgagaaatgatatttgtacaaccattttgtgacaattttttga 43873721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 106 - 149
Target Start/End: Complemental strand, 19418230 - 19418187
Alignment:
Q  106 atgagtaatgatatttgtacaactattttatgacaactttttga 149  Q
    ||||| ||||||||||||||||| ||||||||||||||||||||    
T  19418230 atgagaaatgatatttgtacaaccattttatgacaactttttga 19418187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 107 - 147
Target Start/End: Complemental strand, 37134678 - 37134638
Alignment:
Q  107 tgagtaatgatatttgtacaactattttatgacaacttttt 147  Q
    |||| |||||||||||||||||||||||||||||| |||||    
T  37134678 tgagaaatgatatttgtacaactattttatgacaatttttt 37134638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 103 - 146
Target Start/End: Original strand, 1402645 - 1402688
Alignment:
Q  103 aatatgagtaatgatatttgtacaactattttatgacaactttt 146  Q
    |||||||| ||||||||||||||| | |||||||||||||||||    
T  1402645 aatatgagaaatgatatttgtacatccattttatgacaactttt 1402688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 112 - 146
Target Start/End: Complemental strand, 7867778 - 7867744
Alignment:
Q  112 aatgatatttgtacaactattttatgacaactttt 146  Q
    ||||||||||||||||||||||| |||||||||||    
T  7867778 aatgatatttgtacaactattttgtgacaactttt 7867744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 112 - 146
Target Start/End: Complemental strand, 45529009 - 45528975
Alignment:
Q  112 aatgatatttgtacaactattttatgacaactttt 146  Q
    ||||||||||||||||||||||| |||||||||||    
T  45529009 aatgatatttgtacaactattttttgacaactttt 45528975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 108 - 146
Target Start/End: Complemental strand, 47683973 - 47683935
Alignment:
Q  108 gagtaatgatatttgtacaactattttatgacaactttt 146  Q
    ||||||||||||||||||||| ||||| |||||||||||    
T  47683973 gagtaatgatatttgtacaaccattttgtgacaactttt 47683935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 112 - 146
Target Start/End: Complemental strand, 50559279 - 50559245
Alignment:
Q  112 aatgatatttgtacaactattttatgacaactttt 146  Q
    ||||||||||||||||||||||| |||||||||||    
T  50559279 aatgatatttgtacaactattttttgacaactttt 50559245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 112 - 146
Target Start/End: Original strand, 50652392 - 50652426
Alignment:
Q  112 aatgatatttgtacaactattttatgacaactttt 146  Q
    ||||||||||||||||| |||||||||||||||||    
T  50652392 aatgatatttgtacaaccattttatgacaactttt 50652426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 106 - 147
Target Start/End: Complemental strand, 12094462 - 12094421
Alignment:
Q  106 atgagtaatgatatttgtacaactattttatgacaacttttt 147  Q
    ||||| |||||||||| ||||||||||||||||||| |||||    
T  12094462 atgagaaatgatatttatacaactattttatgacaatttttt 12094421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 109 - 142
Target Start/End: Complemental strand, 31366844 - 31366811
Alignment:
Q  109 agtaatgatatttgtacaactattttatgacaac 142  Q
    ||||| ||||||||||||||||||||||||||||    
T  31366844 agtaacgatatttgtacaactattttatgacaac 31366811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 149
Target Start/End: Complemental strand, 40159905 - 40159868
Alignment:
Q  112 aatgatatttgtacaactattttatgacaactttttga 149  Q
    ||||||||||||||||||||||| | ||||||||||||    
T  40159905 aatgatatttgtacaactattttctaacaactttttga 40159868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 149
Target Start/End: Complemental strand, 46316022 - 46315985
Alignment:
Q  112 aatgatatttgtacaactattttatgacaactttttga 149  Q
    ||||||||||||||||| | ||||||||||||||||||    
T  46316022 aatgatatttgtacaaccactttatgacaactttttga 46315985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 149
Target Start/End: Complemental strand, 47988552 - 47988515
Alignment:
Q  112 aatgatatttgtacaactattttatgacaactttttga 149  Q
    ||||||||||||||||||||||| | ||||||||||||    
T  47988552 aatgatatttgtacaactattttctaacaactttttga 47988515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 149
Target Start/End: Complemental strand, 47997839 - 47997802
Alignment:
Q  112 aatgatatttgtacaactattttatgacaactttttga 149  Q
    ||||||||||||||||||||||| | ||||||||||||    
T  47997839 aatgatatttgtacaactattttctaacaactttttga 47997802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 149
Target Start/End: Complemental strand, 48007126 - 48007089
Alignment:
Q  112 aatgatatttgtacaactattttatgacaactttttga 149  Q
    ||||||||||||||||||||||| | ||||||||||||    
T  48007126 aatgatatttgtacaactattttctaacaactttttga 48007089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 106 - 146
Target Start/End: Complemental strand, 462474 - 462434
Alignment:
Q  106 atgagtaatgatatttgtacaactattttatgacaactttt 146  Q
    ||||| ||||||||||||||||| ||||| |||||||||||    
T  462474 atgagaaatgatatttgtacaaccattttgtgacaactttt 462434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 106 - 146
Target Start/End: Original strand, 1295330 - 1295370
Alignment:
Q  106 atgagtaatgatatttgtacaactattttatgacaactttt 146  Q
    ||||| ||||||||||||||||||||||| ||| |||||||    
T  1295330 atgagaaatgatatttgtacaactattttgtgataactttt 1295370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 106 - 146
Target Start/End: Complemental strand, 6178498 - 6178459
Alignment:
Q  106 atgagtaatgatatttgtacaactattttatgacaactttt 146  Q
    ||||| ||||||||||||||||||||||| |||||||||||    
T  6178498 atgagaaatgatatttgtacaactatttt-tgacaactttt 6178459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 106 - 146
Target Start/End: Original strand, 11327106 - 11327146
Alignment:
Q  106 atgagtaatgatatttgtacaactattttatgacaactttt 146  Q
    ||||| ||||||||||||||||| ||||| |||||||||||    
T  11327106 atgagaaatgatatttgtacaaccattttgtgacaactttt 11327146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 105 - 145
Target Start/End: Original strand, 30580130 - 30580170
Alignment:
Q  105 tatgagtaatgatatttgtacaactattttatgacaacttt 145  Q
    |||||| |||||||||| |||||| ||||||||||||||||    
T  30580130 tatgagaaatgatatttatacaaccattttatgacaacttt 30580170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 114 - 146
Target Start/End: Complemental strand, 41637345 - 41637313
Alignment:
Q  114 tgatatttgtacaactattttatgacaactttt 146  Q
    ||||||||||||||||||||| |||||||||||    
T  41637345 tgatatttgtacaactattttttgacaactttt 41637313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 107 - 147
Target Start/End: Original strand, 45205287 - 45205327
Alignment:
Q  107 tgagtaatgatatttgtacaactattttatgacaacttttt 147  Q
    |||| ||||||||||||||||||||||| |||||| |||||    
T  45205287 tgagaaatgatatttgtacaactattttgtgacaatttttt 45205327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 109 - 145
Target Start/End: Original strand, 49031436 - 49031472
Alignment:
Q  109 agtaatgatatttgtacaactattttatgacaacttt 145  Q
    |||||||||||||||||||||||||| ||| ||||||    
T  49031436 agtaatgatatttgtacaactattttgtgataacttt 49031472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 108 - 146
Target Start/End: Complemental strand, 3154714 - 3154676
Alignment:
Q  108 gagtaatgatatttgtacaactattttatgacaactttt 146  Q
    ||||||||||||||||||||||||||||||| |||||||    
T  3154714 gagtaatgatatttgtacaactattttatgataactttt 3154676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 106 - 149
Target Start/End: Original strand, 42699055 - 42699098
Alignment:
Q  106 atgagtaatgatatttgtacaactattttatgacaactttttga 149  Q
    ||||| ||||||||||||||||| ||||| ||||||||||||||    
T  42699055 atgagaaatgatatttgtacaaccattttgtgacaactttttga 42699098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 112 - 146
Target Start/End: Original strand, 29803229 - 29803263
Alignment:
Q  112 aatgatatttgtacaactattttatgacaactttt 146  Q
    ||||||||||||||||||||||| |||||||||||    
T  29803229 aatgatatttgtacaactattttttgacaactttt 29803263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 107 - 149
Target Start/End: Original strand, 31708369 - 31708411
Alignment:
Q  107 tgagtaatgatatttgtacaactattttatgacaactttttga 149  Q
    |||| ||||||||||||||||| ||||||| ||||||||||||    
T  31708369 tgagaaatgatatttgtacaaccattttataacaactttttga 31708411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 112 - 146
Target Start/End: Original strand, 34428164 - 34428198
Alignment:
Q  112 aatgatatttgtacaactattttatgacaactttt 146  Q
    ||||||||||||||||||||||| |||||||||||    
T  34428164 aatgatatttgtacaactattttttgacaactttt 34428198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 149
Target Start/End: Original strand, 125096 - 125133
Alignment:
Q  112 aatgatatttgtacaactattttatgacaactttttga 149  Q
    ||||||||||||||||||| ||| ||||||||||||||    
T  125096 aatgatatttgtacaactactttgtgacaactttttga 125133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 145
Target Start/End: Original strand, 4098627 - 4098660
Alignment:
Q  112 aatgatatttgtacaactattttatgacaacttt 145  Q
    ||||||||||||||||||||||| ||||||||||    
T  4098627 aatgatatttgtacaactattttgtgacaacttt 4098660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 149
Target Start/End: Original strand, 8897386 - 8897423
Alignment:
Q  112 aatgatatttgtacaactattttatgacaactttttga 149  Q
    ||||||||||||||||| ||||||||||||| ||||||    
T  8897386 aatgatatttgtacaaccattttatgacaaccttttga 8897423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 145
Target Start/End: Original strand, 9065435 - 9065468
Alignment:
Q  112 aatgatatttgtacaactattttatgacaacttt 145  Q
    ||||||||||||||||| ||||||||||||||||    
T  9065435 aatgatatttgtacaaccattttatgacaacttt 9065468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 105 - 134
Target Start/End: Original strand, 14716110 - 14716139
Alignment:
Q  105 tatgagtaatgatatttgtacaactatttt 134  Q
    ||||||||||||||||||||||||||||||    
T  14716110 tatgagtaatgatatttgtacaactatttt 14716139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 149
Target Start/End: Original strand, 36572695 - 36572732
Alignment:
Q  112 aatgatatttgtacaactattttatgacaactttttga 149  Q
    ||||||||||||| ||||||||| ||||||||||||||    
T  36572695 aatgatatttgtataactattttgtgacaactttttga 36572732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 107 - 147
Target Start/End: Original strand, 19983840 - 19983880
Alignment:
Q  107 tgagtaatgatatttgtacaactattttatgacaacttttt 147  Q
    |||| |||||||||||||||| ||||||||||||| |||||    
T  19983840 tgagaaatgatatttgtacaattattttatgacaatttttt 19983880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 105 - 149
Target Start/End: Original strand, 39595269 - 39595313
Alignment:
Q  105 tatgagtaatgatatttgtacaactattttatgacaactttttga 149  Q
    |||||| ||||||||||||||||| | ||| ||||||||||||||    
T  39595269 tatgagaaatgatatttgtacaaccactttgtgacaactttttga 39595313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 28)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 112 - 146
Target Start/End: Original strand, 52430881 - 52430915
Alignment:
Q  112 aatgatatttgtacaactattttatgacaactttt 146  Q
    |||||||||||||||||||||||||||||||||||    
T  52430881 aatgatatttgtacaactattttatgacaactttt 52430915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 106 - 146
Target Start/End: Original strand, 3475867 - 3475907
Alignment:
Q  106 atgagtaatgatatttgtacaactattttatgacaactttt 146  Q
    ||||| ||||||||||||||||| |||||||||||||||||    
T  3475867 atgagaaatgatatttgtacaaccattttatgacaactttt 3475907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 105 - 145
Target Start/End: Complemental strand, 45764462 - 45764422
Alignment:
Q  105 tatgagtaatgatatttgtacaactattttatgacaacttt 145  Q
    |||||| |||||||||| |||||||||||||||||||||||    
T  45764462 tatgagaaatgatatttatacaactattttatgacaacttt 45764422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 112 - 147
Target Start/End: Original strand, 11012145 - 11012180
Alignment:
Q  112 aatgatatttgtacaactattttatgacaacttttt 147  Q
    ||||||||||||||||| ||||||||||||||||||    
T  11012145 aatgatatttgtacaaccattttatgacaacttttt 11012180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 106 - 145
Target Start/End: Original strand, 15515793 - 15515832
Alignment:
Q  106 atgagtaatgatatttgtacaactattttatgacaacttt 145  Q
    ||||| ||||||||| ||||||||||||||||||||||||    
T  15515793 atgagaaatgatattggtacaactattttatgacaacttt 15515832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 112 - 147
Target Start/End: Original strand, 35017157 - 35017192
Alignment:
Q  112 aatgatatttgtacaactattttatgacaacttttt 147  Q
    ||||||||||||||||||||||| ||||||||||||    
T  35017157 aatgatatttgtacaactattttgtgacaacttttt 35017192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 106 - 149
Target Start/End: Complemental strand, 51039189 - 51039146
Alignment:
Q  106 atgagtaatgatatttgtacaactattttatgacaactttttga 149  Q
    ||||| ||||||||||||||||||| ||| ||||||||||||||    
T  51039189 atgagaaatgatatttgtacaactactttgtgacaactttttga 51039146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 112 - 146
Target Start/End: Complemental strand, 24088631 - 24088597
Alignment:
Q  112 aatgatatttgtacaactattttatgacaactttt 146  Q
    ||||||||||||||||| |||||||||||||||||    
T  24088631 aatgatatttgtacaaccattttatgacaactttt 24088597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 107 - 149
Target Start/End: Original strand, 24772670 - 24772712
Alignment:
Q  107 tgagtaatgatatttgtacaactattttatgacaactttttga 149  Q
    |||| ||||||||||||||| | ||||||||||||||||||||    
T  24772670 tgagaaatgatatttgtacatccattttatgacaactttttga 24772712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 107 - 149
Target Start/End: Complemental strand, 25523270 - 25523228
Alignment:
Q  107 tgagtaatgatatttgtacaactattttatgacaactttttga 149  Q
    |||| ||||||||||||||||||||||| | ||||||||||||    
T  25523270 tgagaaatgatatttgtacaactattttctcacaactttttga 25523228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 108 - 146
Target Start/End: Complemental strand, 37775498 - 37775460
Alignment:
Q  108 gagtaatgatatttgtacaactattttatgacaactttt 146  Q
    |||||||||||||| |||||||||||||| |||||||||    
T  37775498 gagtaatgatatttctacaactattttattacaactttt 37775460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 107 - 149
Target Start/End: Complemental strand, 39010209 - 39010167
Alignment:
Q  107 tgagtaatgatatttgtacaactattttatgacaactttttga 149  Q
    |||| ||||||||||||||||| ||||| ||||||||||||||    
T  39010209 tgagaaatgatatttgtacaaccattttgtgacaactttttga 39010167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 112 - 146
Target Start/End: Original strand, 42853943 - 42853977
Alignment:
Q  112 aatgatatttgtacaactattttatgacaactttt 146  Q
    ||||||||||||||||||||||| |||||||||||    
T  42853943 aatgatatttgtacaactattttttgacaactttt 42853977  T

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Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 112 - 146
Target Start/End: Complemental strand, 44272877 - 44272843
Alignment:
Q  112 aatgatatttgtacaactattttatgacaactttt 146  Q
    ||||||||||||||||||||||| |||||||||||    
T  44272877 aatgatatttgtacaactattttttgacaactttt 44272843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 112 - 146
Target Start/End: Original strand, 47014943 - 47014977
Alignment:
Q  112 aatgatatttgtacaactattttatgacaactttt 146  Q
    ||||||||||||||||||||||| |||||||||||    
T  47014943 aatgatatttgtacaactattttgtgacaactttt 47014977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 108 - 146
Target Start/End: Complemental strand, 49371121 - 49371083
Alignment:
Q  108 gagtaatgatatttgtacaactattttatgacaactttt 146  Q
    ||||||||||||||||||||| || ||||||||||||||    
T  49371121 gagtaatgatatttgtacaaccatgttatgacaactttt 49371083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 110 - 144
Target Start/End: Original strand, 50304858 - 50304892
Alignment:
Q  110 gtaatgatatttgtacaactattttatgacaactt 144  Q
    |||||||||||||||||||||||| ||||||||||    
T  50304858 gtaatgatatttgtacaactatttcatgacaactt 50304892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 149
Target Start/End: Complemental strand, 169569 - 169532
Alignment:
Q  112 aatgatatttgtacaactattttatgacaactttttga 149  Q
    ||||||||||||||||| ||||| ||||||||||||||    
T  169569 aatgatatttgtacaaccattttgtgacaactttttga 169532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 149
Target Start/End: Complemental strand, 12074218 - 12074181
Alignment:
Q  112 aatgatatttgtacaactattttatgacaactttttga 149  Q
    ||||||||||||||||| |||||||||||| |||||||    
T  12074218 aatgatatttgtacaaccattttatgacaattttttga 12074181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 149
Target Start/End: Original strand, 12241062 - 12241099
Alignment:
Q  112 aatgatatttgtacaactattttatgacaactttttga 149  Q
    ||||||||||||||||||||||| | ||||||||||||    
T  12241062 aatgatatttgtacaactattttctaacaactttttga 12241099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 149
Target Start/End: Complemental strand, 12694495 - 12694458
Alignment:
Q  112 aatgatatttgtacaactattttatgacaactttttga 149  Q
    ||||||||||||||||| ||||| ||||||||||||||    
T  12694495 aatgatatttgtacaaccattttgtgacaactttttga 12694458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 149
Target Start/End: Original strand, 29525862 - 29525899
Alignment:
Q  112 aatgatatttgtacaactattttatgacaactttttga 149  Q
    ||||||||||||||||| ||||||| ||||||||||||    
T  29525862 aatgatatttgtacaaccattttattacaactttttga 29525899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 145
Target Start/End: Complemental strand, 33093171 - 33093138
Alignment:
Q  112 aatgatatttgtacaactattttatgacaacttt 145  Q
    ||||||||||||||||||||||| ||||||||||    
T  33093171 aatgatatttgtacaactattttgtgacaacttt 33093138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 149
Target Start/End: Complemental strand, 33820403 - 33820366
Alignment:
Q  112 aatgatatttgtacaactattttatgacaactttttga 149  Q
    ||||||||||||||||||||||| | ||||||||||||    
T  33820403 aatgatatttgtacaactattttctaacaactttttga 33820366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 149
Target Start/End: Complemental strand, 34114184 - 34114147
Alignment:
Q  112 aatgatatttgtacaactattttatgacaactttttga 149  Q
    ||||||||||||||||||||||||| | ||||||||||    
T  34114184 aatgatatttgtacaactattttattataactttttga 34114147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 105 - 146
Target Start/End: Complemental strand, 40090869 - 40090828
Alignment:
Q  105 tatgagtaatgatatttgtacaactattttatgacaactttt 146  Q
    ||||||||||||||||||||||| ||||| |||| |||||||    
T  40090869 tatgagtaatgatatttgtacaattatttgatgagaactttt 40090828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 116 - 149
Target Start/End: Original strand, 52632164 - 52632197
Alignment:
Q  116 atatttgtacaactattttatgacaactttttga 149  Q
    ||||||||||||||||||||||| ||||||||||    
T  52632164 atatttgtacaactattttatgataactttttga 52632197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 105 - 145
Target Start/End: Original strand, 4974108 - 4974148
Alignment:
Q  105 tatgagtaatgatatttgtacaactattttatgacaacttt 145  Q
    |||||| ||||||||||||||||||||||| | ||||||||    
T  4974108 tatgagaaatgatatttgtacaactattttttaacaacttt 4974148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 104 - 149
Target Start/End: Original strand, 6423 - 6468
Alignment:
Q  104 atatgagtaatgatatttgtacaactattttatgacaactttttga 149  Q
    ||||||| ||||||||||||||| | ||||||||||||||||||||    
T  6423 atatgagaaatgatatttgtacatccattttatgacaactttttga 6468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 105 - 146
Target Start/End: Original strand, 440715 - 440756
Alignment:
Q  105 tatgagtaatgatatttgtacaactattttatgacaactttt 146  Q
    |||||| ||||||||||||||||||| |||||||||||||||    
T  440715 tatgagaaatgatatttgtacaactactttatgacaactttt 440756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000009; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 106 - 145
Target Start/End: Original strand, 32644621 - 32644660
Alignment:
Q  106 atgagtaatgatatttgtacaactattttatgacaacttt 145  Q
    ||||| ||||||||||||||||||||||| ||||||||||    
T  32644621 atgagaaatgatatttgtacaactattttttgacaacttt 32644660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 112 - 146
Target Start/End: Original strand, 27334862 - 27334896
Alignment:
Q  112 aatgatatttgtacaactattttatgacaactttt 146  Q
    ||||||||||||||||||||||| |||||||||||    
T  27334862 aatgatatttgtacaactattttgtgacaactttt 27334896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 112 - 146
Target Start/End: Original strand, 27395602 - 27395636
Alignment:
Q  112 aatgatatttgtacaactattttatgacaactttt 146  Q
    ||||||||||||||||||||||| |||||||||||    
T  27395602 aatgatatttgtacaactattttgtgacaactttt 27395636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 149
Target Start/End: Complemental strand, 19789143 - 19789106
Alignment:
Q  112 aatgatatttgtacaactattttatgacaactttttga 149  Q
    ||||||||||||||||| ||||||| ||||||||||||    
T  19789143 aatgatatttgtacaaccattttattacaactttttga 19789106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 149
Target Start/End: Original strand, 21506340 - 21506377
Alignment:
Q  112 aatgatatttgtacaactattttatgacaactttttga 149  Q
    ||||||||||||||||| ||||| ||||||||||||||    
T  21506340 aatgatatttgtacaaccattttttgacaactttttga 21506377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 104 - 149
Target Start/End: Complemental strand, 28647510 - 28647465
Alignment:
Q  104 atatgagtaatgatatttgtacaactattttatgacaactttttga 149  Q
    ||||||| ||||||||||||| ||||||||||| |||| |||||||    
T  28647510 atatgagaaatgatatttgtataactattttattacaattttttga 28647465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 116 - 145
Target Start/End: Original strand, 29467373 - 29467402
Alignment:
Q  116 atatttgtacaactattttatgacaacttt 145  Q
    ||||||||||||||||||||||||||||||    
T  29467373 atatttgtacaactattttatgacaacttt 29467402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 106 - 146
Target Start/End: Original strand, 12280438 - 12280478
Alignment:
Q  106 atgagtaatgatatttgtacaactattttatgacaactttt 146  Q
    ||||| ||||||||||||| ||||||||| |||||||||||    
T  12280438 atgagaaatgatatttgtataactattttctgacaactttt 12280478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 105 - 141
Target Start/End: Complemental strand, 21857641 - 21857605
Alignment:
Q  105 tatgagtaatgatatttgtacaactattttatgacaa 141  Q
    |||||| ||||||||||||||||| ||||||||||||    
T  21857641 tatgagaaatgatatttgtacaaccattttatgacaa 21857605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 106 - 146
Target Start/End: Complemental strand, 28670623 - 28670583
Alignment:
Q  106 atgagtaatgatatttgtacaactattttatgacaactttt 146  Q
    ||||||||||||||||  |||||||||| ||||||||||||    
T  28670623 atgagtaatgatatttaaacaactatttgatgacaactttt 28670583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0662 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0662
Description:

Target: scaffold0662; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 112 - 146
Target Start/End: Original strand, 1082 - 1116
Alignment:
Q  112 aatgatatttgtacaactattttatgacaactttt 146  Q
    ||||||||||||||||||||||| |||||||||||    
T  1082 aatgatatttgtacaactattttgtgacaactttt 1116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0154 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 112 - 146
Target Start/End: Complemental strand, 19758 - 19724
Alignment:
Q  112 aatgatatttgtacaactattttatgacaactttt 146  Q
    ||||||||||||||||||||||| |||||||||||    
T  19758 aatgatatttgtacaactattttgtgacaactttt 19724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0154; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 149
Target Start/End: Original strand, 4319 - 4356
Alignment:
Q  112 aatgatatttgtacaactattttatgacaactttttga 149  Q
    ||||||||||||||||| ||||||||| ||||||||||    
T  4319 aatgatatttgtacaaccattttatgataactttttga 4356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 107 - 149
Target Start/End: Original strand, 155905 - 155947
Alignment:
Q  107 tgagtaatgatatttgtacaactattttatgacaactttttga 149  Q
    |||| ||||||||||||||||| ||||||| ||||||||||||    
T  155905 tgagaaatgatatttgtacaaccattttattacaactttttga 155947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 145
Target Start/End: Original strand, 34412 - 34445
Alignment:
Q  112 aatgatatttgtacaactattttatgacaacttt 145  Q
    ||||||||||||||||||||||| ||||||||||    
T  34412 aatgatatttgtacaactattttttgacaacttt 34445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 149
Target Start/End: Original strand, 60473 - 60510
Alignment:
Q  112 aatgatatttgtacaactattttatgacaactttttga 149  Q
    ||||||||||||||||| ||||||| ||||||||||||    
T  60473 aatgatatttgtacaaccattttattacaactttttga 60510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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