View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20661_high_15 (Length: 335)
Name: NF20661_high_15
Description: NF20661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20661_high_15 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 254; Significance: 1e-141; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 13 - 319
Target Start/End: Original strand, 29240117 - 29240415
Alignment:
| Q |
13 |
tacttctgtctgataattgatctttctggaactacatgttaacattagtataattatgacctcttttagagaagggttgatgtcctataaacaattcatt |
112 |
Q |
| |
|
||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29240117 |
tacttctttctgataatcgatctttctggaactacatgttaacattagtataattatgacctcttttagagaagggttgatgtcctataaacaattcatt |
29240216 |
T |
|
| Q |
113 |
caggagcttgaggatgatatattgatatgctaccaactgaagcagaatataggtaagttgtggaaaataatctttcgcattatgtctgagagttcgagtt |
212 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||| ||| |||||||||||||||||||| |
|
|
| T |
29240217 |
caggagcttgaggatgat--------atgctaccaactgaagcagaacataggtaagttgtggaaaataatcttttgcactatgtctgagagttcgagtt |
29240308 |
T |
|
| Q |
213 |
atgtaagaaattttcatatcttcattgacaaatgacttctgattgatttttctaggtatcaacaacacaaatcagagtatatttctacacaaaaaagagc |
312 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
29240309 |
atgtaagaaattttcatatcttcattgacaaatgacttctgattgatttttctaggtatcaacaatacaaatcagagtatatttctacacaaaaaagagc |
29240408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 13 - 319
Target Start/End: Original strand, 16827653 - 16827951
Alignment:
| Q |
13 |
tacttctgtctgataattgatctttctggaactacatgttaacattagtataattatgacctcttttagagaagggttgatgtcctataaacaattcatt |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16827653 |
tacttctgtctgataattgatctttctggaactacatgttaacattagtataattatgacctgttttagagaagggttgatgtcctataaacaattcatt |
16827752 |
T |
|
| Q |
113 |
caggagcttgaggatgatatattgatatgctaccaactgaagcagaatataggtaagttgtggaaaataatctttcgcattatgtctgagagttcgagtt |
212 |
Q |
| |
|
|||||||| |||||||||||| |||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| ||||| |
|
|
| T |
16827753 |
caggagctggaggatgatata--------ctaccaactgaagcagaacgtaggtaagttgtggaaaataatcttttgcattatgtctgagagtttgagtt |
16827844 |
T |
|
| Q |
213 |
atgtaagaaattttcatatcttcattgacaaatgacttctgattgatttttctaggtatcaacaacacaaatcagagtatatttctacacaaaaaagagc |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||| |
|
|
| T |
16827845 |
atgtaagaaattttcatatcttcattgacaaatgacttctgattgatttttctaggtatcaagaatacaaatcagagtatatttctacacaaaaaagagc |
16827944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 80 - 133
Target Start/End: Complemental strand, 846822 - 846769
Alignment:
| Q |
80 |
agagaagggttgatgtcctataaacaattcattcaggagcttgaggatgatata |
133 |
Q |
| |
|
||||| || |||||||||||||| |||||||| ||||||||||| ||||||||| |
|
|
| T |
846822 |
agagagggtttgatgtcctataagcaattcatccaggagcttgaagatgatata |
846769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University