View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20661_high_17 (Length: 323)
Name: NF20661_high_17
Description: NF20661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20661_high_17 |
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Alignment Details
Target: chr3 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 21 - 308
Target Start/End: Original strand, 39515583 - 39515868
Alignment:
| Q |
21 |
acatcctcatattcttaacaggcatctcccccnnnnnnnctttctacatattccaaaacactcctcatttactctccattcacgaaagagggaggattct |
120 |
Q |
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||||||||||||||||||||| |||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39515583 |
acatcctcatattcttaacagacatctccccctttttttcttaatacatattccaaaacactcctcatttactctccattcacgaaagagggaggattct |
39515682 |
T |
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| Q |
121 |
agtccacttaccaaaacttacaatattatgaaaaattgtaaatacatgcagcaaatacagccgcctcaaatgtggtccagatgcaattgtgaagatatgt |
220 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39515683 |
agtccacttaccaaaactta--atattatgaaaaattgtaaatacatgcagcaaatgcagccgcctcaaatgtggtccagatgcaattgtgaagatatgt |
39515780 |
T |
|
| Q |
221 |
taaatcttgaatactgaatagagatgtaacagtagcattggttagatggcaatataatgtcagtcataatttcatcacgttcaaatgt |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39515781 |
taaatcttgaatactgaatagagatgtaacagtagcattggttagatggcaatataatgtcagtcataatttcatcacgttcaaatgt |
39515868 |
T |
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