View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20661_high_20 (Length: 288)

Name: NF20661_high_20
Description: NF20661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20661_high_20
NF20661_high_20
[»] chr3 (1 HSPs)
chr3 (1-288)||(41849817-41850104)


Alignment Details
Target: chr3 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 1 - 288
Target Start/End: Complemental strand, 41850104 - 41849817
Alignment:
Q  1 ggccaacctttcaattcaactcccacgaaccagtttggccatacgcaactactcaaccaaacgaccatgtttcaccacttctgctttacccttcacaatc 100  Q
    |||||||||||||||||||||||||||||| |||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||    
T  41850104 ggccaacctttcaattcaactcccacgaacaagtttgtccatacgcaacttctcaaccaaacgaccatgtttcaccacttctgctttaccctttacaatc 41850005  T
Q  101 acttgctctggtctcgctctctttcatttctttctcttcattttataccattgcttacttcatgtaaaataaccaagacattcaaatttgtttgttctgt 200  Q
    ||||||||||||||  |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41850004 acttgctctggtcttactctatttcatttctttctcttcattttataccattgcttacttcatgtaaaataaccaagacattcaaatttgtttgttctgt 41849905  T
Q  201 tgtagttgtaggagaagctgagttagatggaactgagaataagccaaggttacttagtctcaacaaaatcaagggtgttgcctgtggt 288  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41849904 tgtagttgtaggagaagctgagttagatggaactgagaataagccaaggttacttagtctcaacaaaatcaagggtgttgcctgtggt 41849817  T

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