View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20661_high_23 (Length: 263)
Name: NF20661_high_23
Description: NF20661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20661_high_23 |
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Alignment Details
Target: chr2 (Bit Score: 166; Significance: 6e-89; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 19 - 245
Target Start/End: Original strand, 26382450 - 26382687
Alignment:
| Q |
19 |
gtccactcatcgccttctttcgccaccatagttttcaccatgcctcctttcaaccatcatgagatcgttcctgcacggttgtttggtctgatcgttcaga |
118 |
Q |
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| T |
26382450 |
gtccactcatcgccttctttcaccaccatagttttcaccacgcctcctttcaaccatcatgagatcgttcctgcatggttgtttggtctggtcgttcaga |
26382549 |
T |
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| Q |
119 |
aaaa------------gcttcgatcaaaacatgtctcaggttatatgcacgagtgcatcgtatcgtttcttcaattaaccctttatatgcatatgaggaa |
206 |
Q |
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|||| |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26382550 |
aaaagctcaaacaaaagcttcgatcaaaacgtgtctcaggttatatgcacgagtccatcgtatcgtttcttcaattaaccctttatatgcatatgaggaa |
26382649 |
T |
|
| Q |
207 |
gactataattgaaggttctcaataaactgttgcttatta |
245 |
Q |
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|||||||||||||||||||||| |||||||||||||||| |
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| T |
26382650 |
gactataattgaaggttctcaa-aaactgttgcttatta |
26382687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 103; Significance: 2e-51; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 23 - 245
Target Start/End: Complemental strand, 8856749 - 8856504
Alignment:
| Q |
23 |
actcatcgccttctttcgccaccatagttttcaccatgcctcctttcaaccatcatgagatcgttcctgcacggttgtttggtctgatcgttcagaaaaa |
122 |
Q |
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||||||||||||||||||| |||||||||| |||| ||||||||||||||||||| ||||| || |||||||||||||||||| | ||||||||||||| |
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| T |
8856749 |
actcatcgccttctttcgcagccatagtttttaccacgcctcctttcaaccatcataagatcttttctgcacggttgtttggtccggtcgttcagaaaaa |
8856650 |
T |
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| Q |
123 |
gcttc------------gatcaaaacatgtctcaggttatatgca-----------cgagtgcatcgtatcgtttcttcaattaaccctttatatgcata |
199 |
Q |
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||| ||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
8856649 |
gctaaaaggttggcgctgatcaaaacatgtctcaggttatatcttttttattatttcgagtccatcgtatcgtttcttcaattaaccctttatatgcata |
8856550 |
T |
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| Q |
200 |
tgaggaagactataattgaaggttctcaataaactgttgcttatta |
245 |
Q |
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| T |
8856549 |
tgaggaagactataattgaaggttctcaataaactgctgcttatta |
8856504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 97; Significance: 9e-48; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 23 - 245
Target Start/End: Original strand, 14366476 - 14366722
Alignment:
| Q |
23 |
actcatcgccttctttcgccaccatagttttcaccatgcctcctttcaaccatcatgagatcgttcctgcacggttgtttggtctgatcgttcagaaaaa |
122 |
Q |
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|||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| ||||||||||||||||| ||||||||| | ||||||||||||| |
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| T |
14366476 |
actcatcgccttctttcgccgccatagttttcaccacgcctcctttcaaccatcataagatcgttcctgcacggctgtttggtccggtcgttcagaaaaa |
14366575 |
T |
|
| Q |
123 |
gc------------ttcgatcaaaacatgtctcaggttatatgc------------acgagtgcatcgtatcgtttcttcaattaaccctttatatgcat |
198 |
Q |
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|| ||||||| | || ||||||||||||||| | |||| ||||||||||||||||||||||||||||||||||||| |
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| T |
14366576 |
gctcaaacaaaagcttcgatcgatacgtgtctcaggttatatcttttttattatttatgagtccatcgtatcgtttcttcaattaaccctttatatgcat |
14366675 |
T |
|
| Q |
199 |
atgaggaagactataattgaaggttctcaataaactgttgcttatta |
245 |
Q |
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|||||||||||||||||||||| |||||||||||| ||||||||| |
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| T |
14366676 |
atgaggaagactataattgaagactctcaataaactactgcttatta |
14366722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 23 - 245
Target Start/End: Complemental strand, 19577069 - 19576823
Alignment:
| Q |
23 |
actcatcgccttctttcgccaccatagttttcaccatgcctcctttcaaccatcatgagatcgttcctgcacggttgtttggtctgatcgttcagaaa-- |
120 |
Q |
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||||||| |||||||||||| ||||||||||||||| ||||||||||||||||||| ||||| ||||||||||| ||||||||| | ||||||||||| |
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| T |
19577069 |
actcatcaccttctttcgccgccatagttttcaccacgcctcctttcaaccatcataagatctttcctgcacggctgtttggtccggtcgttcagaaaaa |
19576970 |
T |
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| Q |
121 |
----------aagcttcgatcaaaacatgtctcaggttatatgc------------acgagtgcatcgtatcgtttcttcaattaaccctttatatgcat |
198 |
Q |
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||||||| ||| | || ||||||||||||||| | |||| ||||||||||||||||||||||||||||||||||||| |
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| T |
19576969 |
gctcaaacaaaagcttctatcgatacgtgtctcaggttatatcttttttattatttatgagtccatcgtatcgtttcttcaattaaccctttatatgcat |
19576870 |
T |
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| Q |
199 |
atgaggaagactataattgaaggttctcaataaactgttgcttatta |
245 |
Q |
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|||||||||||||||||||||| |||||||||||| ||||||||| |
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| T |
19576869 |
atgaggaagactataattgaagactctcaataaactactgcttatta |
19576823 |
T |
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