View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20661_high_3 (Length: 537)
Name: NF20661_high_3
Description: NF20661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20661_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 516; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 516; E-Value: 0
Query Start/End: Original strand, 1 - 520
Target Start/End: Complemental strand, 46452778 - 46452259
Alignment:
| Q |
1 |
tagggccaagtgggccagcgtatataagctctcctccccgcttcataaacagaagctgtaaaagaaattgagatttcatcaaatttattagattatacaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46452778 |
tagggccaagtgggccagcgtatataagctctcctccccgcttcataaacagaagctgtaaaagaaattgagatttcatcaaatttattagattatacaa |
46452679 |
T |
|
| Q |
101 |
gtgttatagagaagttcagatagaaacataacatgctgctctctcagaaaccatcaatcaattcgaataagagacaggataacagaaacttgtatatacg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
46452678 |
gtgttatagagaagttcagatagaaacataacatgctgctctctcagaaaccatcaatcaattcgaataagagacgggataacagaaacttgtatatacg |
46452579 |
T |
|
| Q |
201 |
aaagatacatgtattgttacatatccaaaagaataaaatagagagaaattgtggtataacaacatacataacataacagtatcaacataaaagcaagcaa |
300 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46452578 |
aaagatacatgtattgttacatatccaaaagaataaaatagagagaaattgtggtataacaacatacataacataacagtatcaacataaaagcaagcaa |
46452479 |
T |
|
| Q |
301 |
ggggaagggatggagcggcgatgtttcctactattagacaacttcaaattctcaattttaaatgaaatgcttgtaatgccctctcttaaggaaaatacct |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46452478 |
ggggaagggatggagcggcgatgtttcctactattagacaacttcaaattctcaattttaaatgaaatgcttgtaatgccctctcttaaggaaaatacct |
46452379 |
T |
|
| Q |
401 |
catcaaaggattcaaatatgtctatgctaggctgatggatggtgcagacaatcgttcgcccagtatttacaatattcctcacagttctcatcacaatggc |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46452378 |
catcaaaggattcaaatatgtctatgctaggctgatggatggtgcagacaatcgttcgcccagtatttacaatattcctcacagttctcatcacaatggc |
46452279 |
T |
|
| Q |
501 |
tgcagccctagcatccaatc |
520 |
Q |
| |
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|||||||||||||||||||| |
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| T |
46452278 |
tgcagccctagcatccaatc |
46452259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 397 - 515
Target Start/End: Original strand, 39563709 - 39563827
Alignment:
| Q |
397 |
acctcatcaaaggattcaaatatgtctatgctaggctgatggatggtgcagacaatcgttcgcccagtatttacaatattcctcacagttctcatcacaa |
496 |
Q |
| |
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||||||||||| ||||||||||| || ||||||||||| ||||| || || |||| |||| ||||| ||||| | ||||| || ||||||||||||| |
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| T |
39563709 |
acctcatcaaaagattcaaatatatcaatgctaggctggtggatagtacaaacaactgttcttccagtgtttactgtgttcctaactgttctcatcacaa |
39563808 |
T |
|
| Q |
497 |
tggctgcagccctagcatc |
515 |
Q |
| |
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| ||||||||||| ||||| |
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| T |
39563809 |
tagctgcagcccttgcatc |
39563827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 397 - 515
Target Start/End: Complemental strand, 39339243 - 39339125
Alignment:
| Q |
397 |
acctcatcaaaggattcaaatatgtctatgctaggctgatggatggtgcagacaatcgttcgcccagtatttacaatattcctcacagttctcatcacaa |
496 |
Q |
| |
|
||||||||||| ||||||||||| || ||||||||||| ||||| || || |||| |||| ||||| | ||| | ||||| || |||||||| |||| |
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| T |
39339243 |
acctcatcaaaagattcaaatatatcaatgctaggctggtggattgtacaaacaactgttcttccagtgtctactgtgttcctaactgttctcataacaa |
39339144 |
T |
|
| Q |
497 |
tggctgcagccctagcatc |
515 |
Q |
| |
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| ||||||||||| ||||| |
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| T |
39339143 |
tagctgcagcccttgcatc |
39339125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 397 - 443
Target Start/End: Complemental strand, 39366666 - 39366620
Alignment:
| Q |
397 |
acctcatcaaaggattcaaatatgtctatgctaggctgatggatggt |
443 |
Q |
| |
|
||||||||||| ||||||||||| || ||||||||||| |||||||| |
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|
| T |
39366666 |
acctcatcaaaagattcaaatatatcaatgctaggctggtggatggt |
39366620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 397 - 515
Target Start/End: Original strand, 39537613 - 39537731
Alignment:
| Q |
397 |
acctcatcaaaggattcaaatatgtctatgctaggctgatggatggtgcagacaatcgttcgcccagtatttacaatattcctcacagttctcatcacaa |
496 |
Q |
| |
|
||||||||||| ||||||||||| || |||||||| || || ||||| || |||| |||| ||||| | ||| | ||||| || |||||||| |||| |
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| T |
39537613 |
acctcatcaaaagattcaaatatatcaatgctaggttggtgaatggtacaaacaactgttcttccagtgtctactgtgttcctaactgttctcataacaa |
39537712 |
T |
|
| Q |
497 |
tggctgcagccctagcatc |
515 |
Q |
| |
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| ||||||||||| ||||| |
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| T |
39537713 |
tagctgcagcccttgcatc |
39537731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 397 - 443
Target Start/End: Original strand, 39547078 - 39547124
Alignment:
| Q |
397 |
acctcatcaaaggattcaaatatgtctatgctaggctgatggatggt |
443 |
Q |
| |
|
||||||||||| ||||||||||| || ||||||||||| |||||||| |
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|
| T |
39547078 |
acctcatcaaaagattcaaatatatcaatgctaggctggtggatggt |
39547124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 395 - 443
Target Start/End: Original strand, 44233573 - 44233621
Alignment:
| Q |
395 |
atacctcatcaaaggattcaaatatgtctatgctaggctgatggatggt |
443 |
Q |
| |
|
||||||||||||| | |||||||||||| |||||||||||||||||||| |
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| T |
44233573 |
atacctcatcaaatgcttcaaatatgtcaatgctaggctgatggatggt |
44233621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 395 - 443
Target Start/End: Original strand, 44210551 - 44210599
Alignment:
| Q |
395 |
atacctcatcaaaggattcaaatatgtctatgctaggctgatggatggt |
443 |
Q |
| |
|
||||||||||||| | |||||||||||| |||||||| ||||||||||| |
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|
| T |
44210551 |
atacctcatcaaatgcttcaaatatgtcaatgctaggttgatggatggt |
44210599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 395 - 443
Target Start/End: Original strand, 44222751 - 44222799
Alignment:
| Q |
395 |
atacctcatcaaaggattcaaatatgtctatgctaggctgatggatggt |
443 |
Q |
| |
|
||||||||||||| | |||||||||||| |||||||| ||||||||||| |
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|
| T |
44222751 |
atacctcatcaaatgcttcaaatatgtcaatgctaggttgatggatggt |
44222799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 396 - 446
Target Start/End: Original strand, 2148394 - 2148444
Alignment:
| Q |
396 |
tacctcatcaaaggattcaaatatgtctatgctaggctgatggatggtgca |
446 |
Q |
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||||||||||||||| ||||||||||| || || ||||||||||| ||||| |
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|
| T |
2148394 |
tacctcatcaaaggaatcaaatatgtcaatactcggctgatggatcgtgca |
2148444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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