View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20661_high_30 (Length: 249)
Name: NF20661_high_30
Description: NF20661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20661_high_30 |
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Alignment Details
Target: chr3 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 9 - 243
Target Start/End: Complemental strand, 39515481 - 39515252
Alignment:
| Q |
9 |
cagtcaaaatatttaatacaactcaaaataataaaataatcgatttcatgtgtagctaccaaataacgcttaaaaatgaataaagtttaattggcaatct |
108 |
Q |
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| T |
39515481 |
cagtcaaaatatttaatacaactcaaaataataa-----tcgatttcatgtgtagctaccaaataacgcttaaaaatgaataaagtttaattggcaatct |
39515387 |
T |
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| Q |
109 |
gcacgttttaaattactaacaaaacatgggtgcatttttacaggtgttttcttcaataaactacgaaaaatacctaaagaaataaatgcaagttttgtcc |
208 |
Q |
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| T |
39515386 |
gcacgttttaaattactaacaaaacatgggtgcgtttttacaggtgttttcttcaataaactacgaaaaatacctaaagaaataaatgcaagttttgtcc |
39515287 |
T |
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| Q |
209 |
tctattatatacactcttgagatgagaataatcta |
243 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
39515286 |
tctattatatacactcttgagatgagaataatcta |
39515252 |
T |
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