View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20661_high_35 (Length: 226)
Name: NF20661_high_35
Description: NF20661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20661_high_35 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 3 - 226
Target Start/End: Complemental strand, 47333554 - 47333331
Alignment:
| Q |
3 |
gaaatgaagcaatacgtttgaccatatcaatagaattctgagtttcaggatgataaatctgaaaacaatgttcttcaccttcaacatgaacaagttccac |
102 |
Q |
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|||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47333554 |
gaaaagaagcaatacgtttgaccatatcaatagaactctgagtttcaggatgataaatctgaaaacaatgttcttcaccttcaacatgaacaagttccac |
47333455 |
T |
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| Q |
103 |
atcacctttccaaccacttttcttaacagcatcatagtaccaaatccctctgtctcttaaatcatcattcccagcaacaaaaatcaatatcttaggacaa |
202 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47333454 |
atcacctttccaaccacttttcttaacagcatcatagtaccaaatccctctgtctcttaaatcatcattcccagcaacaaaaatcaatatcttaggacaa |
47333355 |
T |
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| Q |
203 |
ccaataatatccaaacttggagca |
226 |
Q |
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|||||||||||||||||||||||| |
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| T |
47333354 |
ccaataatatccaaacttggagca |
47333331 |
T |
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