View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20661_high_4 (Length: 514)
Name: NF20661_high_4
Description: NF20661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20661_high_4 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 479; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 479; E-Value: 0
Query Start/End: Original strand, 13 - 499
Target Start/End: Complemental strand, 47333349 - 47332863
Alignment:
| Q |
13 |
aatatccaaacttggagcatcaatagccaaaggattgatcaaagggttatcaatcccaccaggtgcatcaggatacacaaaattccaaactttcataggt |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
47333349 |
aatatccaaacttggagcatcaatagccaaaggattgatcaaagggttatcaatcccaccaggtgcatcaggatacacaaaattccatactttcataggt |
47333250 |
T |
|
| Q |
113 |
gaactttgttcatgcccttcaactgattctgacaaaatcggcttcgaactccaaaacaaaggaaaagcaagtaatgctcctctaattttcacatcaccag |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47333249 |
gaactttgttcatgcccttcaactgattctgacaaaaccggcttcgaactccaaaacaaaggaaaagcaagtaatgctcctctaattttcacatcaccag |
47333150 |
T |
|
| Q |
213 |
gtaaagtttcaacaccattaccaacacgaagaagtgcattatgtgcaatatttgcacctgaagtatcaccaccaatgtaaaaacggtcaaaatcaccgta |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47333149 |
gtaaagtttcaacaccattaccaacacgaagaagtgcattatgtgcaatatttgcacctgaagtatcaccaccaatgtaaaaacggtcaaaatcaccgta |
47333050 |
T |
|
| Q |
313 |
tttgattaaccatggttcagcgttattgatgttgttgatggaatgagaagtgatccatttgagagaaaaccaaccatcatcatatgcagcaggaagaggg |
412 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47333049 |
tttgattaaccatggttcagcgttattgatgttgttgatggaatgagaagtgatccatttgagagaaaaccaaccatcatcatatgcagcaggaagaggg |
47332950 |
T |
|
| Q |
413 |
tgttctggtgcaagtctatattcaacagaaacaacaagaacatttgcttgtgaagcaatgatgttaaggtaacgttggtgaagaaaa |
499 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47332949 |
tgttctggtgcaagtctatattcaacagaaacaacaagaacatttgcttgtgaagcaatgatgttaaggtaacgttggtgaagaaaa |
47332863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 400 - 447
Target Start/End: Complemental strand, 47301406 - 47301359
Alignment:
| Q |
400 |
agcaggaagagggtgttctggtgcaagtctatattcaacagaaacaac |
447 |
Q |
| |
|
|||||| |||||||||||||| |||||||| ||||||||||||||||| |
|
|
| T |
47301406 |
agcaggtagagggtgttctggagcaagtctgtattcaacagaaacaac |
47301359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 43 - 102
Target Start/End: Complemental strand, 47301763 - 47301704
Alignment:
| Q |
43 |
aggattgatcaaagggttatcaatcccaccaggtgcatcaggatacacaaaattccaaac |
102 |
Q |
| |
|
|||||| |||| ||| |||||||||||||| ||||| ||||||||||||||||||||| |
|
|
| T |
47301763 |
aggattaatcataggattatcaatcccaccgggtgctgaaggatacacaaaattccaaac |
47301704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 400 - 447
Target Start/End: Complemental strand, 47304304 - 47304257
Alignment:
| Q |
400 |
agcaggaagagggtgttctggtgcaagtctatattcaacagaaacaac |
447 |
Q |
| |
|
|||||| |||||||||||||| || ||||| ||||||||||||||||| |
|
|
| T |
47304304 |
agcaggtagagggtgttctggagcgagtctgtattcaacagaaacaac |
47304257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 400 - 449
Target Start/End: Complemental strand, 17841543 - 17841494
Alignment:
| Q |
400 |
agcaggaagagggtgttctggtgcaagtctatattcaacagaaacaacaa |
449 |
Q |
| |
|
|||||| |||||||||||||| || ||||| ||||||||||||||||||| |
|
|
| T |
17841543 |
agcaggtagagggtgttctggagcgagtctgtattcaacagaaacaacaa |
17841494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 43 - 102
Target Start/End: Complemental strand, 17841900 - 17841841
Alignment:
| Q |
43 |
aggattgatcaaagggttatcaatcccaccaggtgcatcaggatacacaaaattccaaac |
102 |
Q |
| |
|
|||||| |||| ||| ||||||||||||| |||||| ||||||||||||||||||||| |
|
|
| T |
17841900 |
aggattaatcataggattatcaatcccacaaggtgctgaaggatacacaaaattccaaac |
17841841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 18 - 110
Target Start/End: Original strand, 653540 - 653632
Alignment:
| Q |
18 |
ccaaacttggagcatcaatagccaaaggattgatcaaagggttatcaatcccaccaggtgcatcaggatacacaaaattccaaactttcatag |
110 |
Q |
| |
|
||||||| || ||| ||||||| ||||||| | || |||||||||||||||||| ||||| ||| |||||||| ||||| ||||| |||| |
|
|
| T |
653540 |
ccaaactaggtgcaccaatagcacaaggattaaccatagggttatcaatcccaccctttgcattagggtacacaaagttccacactttaatag |
653632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 422 - 470
Target Start/End: Complemental strand, 17473243 - 17473195
Alignment:
| Q |
422 |
gcaagtctatattcaacagaaacaacaagaacatttgcttgtgaagcaa |
470 |
Q |
| |
|
|||||||||||||||| |||||||||| |||||||||||||| |||| |
|
|
| T |
17473243 |
gcaagtctatattcaattgaaacaacaatcacatttgcttgtgatgcaa |
17473195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University