View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20661_low_10 (Length: 432)

Name: NF20661_low_10
Description: NF20661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20661_low_10
NF20661_low_10
[»] chr4 (6 HSPs)
chr4 (17-425)||(46258226-46258630)
chr4 (17-425)||(46029740-46030146)
chr4 (17-124)||(2357707-2357814)
chr4 (17-90)||(7982763-7982836)
chr4 (17-98)||(28910934-28911015)
chr4 (18-125)||(47806524-47806630)
[»] chr1 (16 HSPs)
chr1 (17-125)||(14939010-14939118)
chr1 (17-125)||(14944254-14944362)
chr1 (17-125)||(14949027-14949135)
chr1 (17-125)||(18527051-18527160)
chr1 (282-360)||(14949323-14949401)
chr1 (34-125)||(49251262-49251352)
chr1 (17-103)||(50616279-50616365)
chr1 (17-103)||(50624107-50624193)
chr1 (17-125)||(270586-270694)
chr1 (292-360)||(14939316-14939384)
chr1 (292-360)||(14944560-14944628)
chr1 (17-92)||(14945650-14945725)
chr1 (17-92)||(14940408-14940483)
chr1 (17-92)||(14950415-14950490)
chr1 (17-92)||(14954656-14954731)
chr1 (27-78)||(42105669-42105720)
[»] chr7 (3 HSPs)
chr7 (17-201)||(36718871-36719054)
chr7 (17-125)||(3868182-3868290)
chr7 (17-67)||(36718247-36718297)
[»] chr8 (4 HSPs)
chr8 (17-116)||(8790543-8790642)
chr8 (17-123)||(16939066-16939170)
chr8 (136-201)||(17636873-17636939)
chr8 (58-114)||(4942898-4942954)
[»] chr2 (2 HSPs)
chr2 (17-104)||(35413582-35413669)
chr2 (136-201)||(35413711-35413777)
[»] chr6 (4 HSPs)
chr6 (17-125)||(4171177-4171282)
chr6 (33-125)||(4226789-4226878)
chr6 (17-125)||(16914272-16914379)
chr6 (17-69)||(4175864-4175916)
[»] chr5 (5 HSPs)
chr5 (22-98)||(23074804-23074880)
chr5 (17-101)||(2414355-2414439)
chr5 (374-421)||(27179044-27179091)
chr5 (30-105)||(27179120-27179195)
chr5 (16-125)||(2413214-2413321)
[»] chr3 (1 HSPs)
chr3 (17-55)||(13618739-13618777)


Alignment Details
Target: chr4 (Bit Score: 290; Significance: 1e-162; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 17 - 425
Target Start/End: Complemental strand, 46258630 - 46258226
Alignment:
Q  17 attaattagaatagactgacaatgtaaaacaactttacaatatcaaccaattataattatctcattagacacatcatcttaagtgttaaaaatagaaaaa 116  Q
    ||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46258630 attaattagaatagactgacaatgtaaaataactttacactatcaaccaattataattatctcattagacacatcatcttaagtgttaaaaatagaaaaa 46258531  T
Q  117 atcaaataannnnnnnnncaataaatgtcttctacccatgtttcttaatttggtcatttgatttaacattttcaatctgcattataatagtgtatcatgt 216  Q
    |||||||||         |||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  46258530 atcaaataaaaatttttccaataaatttcttctacccgtgtttcttaatttggtcatttgatttaacattttcaatctgcattgtaatagtgtatcatgt 46258431  T
Q  217 cacactaaaatcaataaaacatcatgtnnnnnnnnnnnnnnnnnttgagcatggtatttcgtgtgtggatctccatttgtaattggaagggtcggttttc 316  Q
    |||||||||||||||||||||||||||                 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||     
T  46258430 cacactaaaatcaataaaacatcatgtaaaaaaaataaaa----ttgagcatggtatctcgtgtgtggatctccatttgtaattggaagggtcggttttt 46258335  T
Q  317 ttatattgagagggcctgaattttctgcacaattgttcttgttttatcttggtataagtcagaaaggatctcgcttggagtcatgaggactaagttttgc 416  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  46258334 ctatattgagagggcctgaattttctgcacaattgttcttgttttatcttggtataagtcagaaaggatctcacttggagtcatgaggactaagttttgc 46258235  T
Q  417 ttcatctca 425  Q
    |||||||||    
T  46258234 ttcatctca 46258226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 17 - 425
Target Start/End: Original strand, 46029740 - 46030146
Alignment:
Q  17 attaattagaatagactgacaatgtaaaacaactttacaatatcaaccaattataattatctcattagacacatcatcttaagtgttaaaaatagaaaaa 116  Q
    |||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46029740 attaattagaatagactgacgatgtaaaacaactttacactatcaaccaattataattatctcattagacacatcatcttaagtgttaaaaatagaaaaa 46029839  T
Q  117 a--tcaaataannnnnnnnncaataaatgtcttctacccatgtttcttaatttggtcatttgatttaacattttcaatctgcattataatagtgtatcat 214  Q
    |  ||||||||         ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  46029840 aaatcaaataaatttttttccaataaatgtcttctacccatgtttcttaatttggtcatttgatttaacattttcgatctgcattataatagtgtatcat 46029939  T
Q  215 gtcacactaaaatcaataaaacatcatgtnnnnnnnnnnnnnnnnnttgagcatggtatttcgtgtgtggatctccatttgtaattggaagggtcggttt 314  Q
    |||||||||||||||||||||||||||||                 |||||||| |||| ||||||||||||||||||||||||||| ||||||||||||    
T  46029940 gtcacactaaaatcaataaaacatcatgtaaaaaaaataaaa----ttgagcatagtatctcgtgtgtggatctccatttgtaattgaaagggtcggttt 46030035  T
Q  315 tcttatattgagagggcctgaattttctgcacaattgttcttgttttatcttggtataagtcagaaaggatctcgcttggagtcatgaggactaagtttt 414  Q
    |  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  46030036 ttctatattgagagggcctgaattttctgcacaattgttcttgttttatcttggtataagtcagaaaggatctcacttggagtcatgaggactaagtttt 46030135  T
Q  415 gcttcatctca 425  Q
    |||||||||||    
T  46030136 gcttcatctca 46030146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 17 - 124
Target Start/End: Original strand, 2357707 - 2357814
Alignment:
Q  17 attaattagaatagactgacaatgtaaaacaactttacaatatcaaccaattataattatctcattagacacatcatcttaagtgttaaaaatagaaaaa 116  Q
    ||||||||||||||||| ||| ||||||||||||||| | ||||||||||||| |||| ||  |||| |||||||||||||| ||||||||| |  ||||    
T  2357707 attaattagaatagactaacagtgtaaaacaactttagactatcaaccaattaaaattctccgattaaacacatcatcttaaatgttaaaaaaatgaaaa 2357806  T
Q  117 atcaaata 124  Q
    ||||||||    
T  2357807 atcaaata 2357814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 17 - 90
Target Start/End: Complemental strand, 7982836 - 7982763
Alignment:
Q  17 attaattagaatagactgacaatgtaaaacaactttacaatatcaaccaattataattatctcattagacacat 90  Q
    ||||||||||||||||||||||||||||||||||||||| |||||| |||||| ||| | |  |||||||||||    
T  7982836 attaattagaatagactgacaatgtaaaacaactttacattatcaatcaattaaaatcacccaattagacacat 7982763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 17 - 98
Target Start/End: Complemental strand, 28911015 - 28910934
Alignment:
Q  17 attaattagaatagactgacaatgtaaaacaactttacaatatcaaccaattataattatctcattagacacatcatcttaa 98  Q
    ||||||||||||||||||||| |||||||||| |||||| |||||||| |||| ||| |||  |||| ||||||||||||||    
T  28911015 attaattagaatagactgacagtgtaaaacaaatttacactatcaaccgattaaaatcatccaattaaacacatcatcttaa 28910934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 125
Target Start/End: Original strand, 47806524 - 47806630
Alignment:
Q  18 ttaattagaatagactgacaatgtaaaacaactttacaatatcaaccaattataattatctc-attagacacatcatcttaagtgttaaaaatag-aaaa 115  Q
    ||||||||||||||||||||  ||||||||| ||||||   ||||||||||| ||| | ||| |||| ||| |||| ||||| |||||||||||| ||||    
T  47806524 ttaattagaatagactgacagcgtaaaacaa-tttacaccgtcaaccaattaaaatca-ctcaattaaacatatcaacttaa-tgttaaaaatagaaaaa 47806620  T
Q  116 aatcaaataa 125  Q
    ||||||||||    
T  47806621 aatcaaataa 47806630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 65; Significance: 2e-28; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 17 - 125
Target Start/End: Original strand, 14939010 - 14939118
Alignment:
Q  17 attaattagaatagactgacaatgtaaaacaactttacaatatcaaccaattataattatctcattagacacatcatcttaagtgttaaaaatagaaaaa 116  Q
    |||||||||||||||  ||||||||||||||| |||||| ||||||| ||||| ||| ||   ||||||||||| |||||||||||||||||||||||||    
T  14939010 attaattagaatagatcgacaatgtaaaacaattttacactatcaactaattaaaatcatacaattagacacattatcttaagtgttaaaaatagaaaaa 14939109  T
Q  117 atcaaataa 125  Q
    |||||||||    
T  14939110 atcaaataa 14939118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 17 - 125
Target Start/End: Original strand, 14944254 - 14944362
Alignment:
Q  17 attaattagaatagactgacaatgtaaaacaactttacaatatcaaccaattataattatctcattagacacatcatcttaagtgttaaaaatagaaaaa 116  Q
    |||||||||||||||  ||||||||||||||| |||||| ||||||| ||||| ||| ||   ||||||||||| |||||||||||||||||||||||||    
T  14944254 attaattagaatagatcgacaatgtaaaacaattttacactatcaactaattaaaatcatacaattagacacattatcttaagtgttaaaaatagaaaaa 14944353  T
Q  117 atcaaataa 125  Q
    |||||||||    
T  14944354 atcaaataa 14944362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 17 - 125
Target Start/End: Original strand, 14949027 - 14949135
Alignment:
Q  17 attaattagaatagactgacaatgtaaaacaactttacaatatcaaccaattataattatctcattagacacatcatcttaagtgttaaaaatagaaaaa 116  Q
    |||||||| ||||||| ||||| ||||||||| |||||| ||||||| ||||| ||| ||   ||||||||||||||||||||||||| |||||||||||    
T  14949027 attaattaaaatagaccgacaaagtaaaacaattttacattatcaactaattaaaatcatacaattagacacatcatcttaagtgttacaaatagaaaaa 14949126  T
Q  117 atcaaataa 125  Q
    |||||||||    
T  14949127 atcaaataa 14949135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 17 - 125
Target Start/End: Original strand, 18527051 - 18527160
Alignment:
Q  17 attaattagaatagactgacaatgtaaaacaactttacaatatcaaccaattataattatctcattagacacatcatcttaagtgtt-aaaaatagaaaa 115  Q
    ||||||||||||||||| ||| ||  ||||||||||||| ||||||||||||| ||| ||   |||||||||||||||||||||||| ||||| || |||    
T  18527051 attaattagaatagactaacagtgcgaaacaactttacactatcaaccaattaaaatcattcaattagacacatcatcttaagtgttaaaaaaaaggaaa 18527150  T
Q  116 aatcaaataa 125  Q
    ||||||||||    
T  18527151 aatcaaataa 18527160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 282 - 360
Target Start/End: Original strand, 14949323 - 14949401
Alignment:
Q  282 tggatctccatttgtaattggaagggtcggttttcttatattgagagggcctgaattttctgcacaattgttcttgttt 360  Q
    ||||||||| ||||||||||| |||||||||| |  ||||||| |||||||| ||||||||||||||||||||||||||    
T  14949323 tggatctccgtttgtaattggcagggtcggttcttctatattgggagggcctaaattttctgcacaattgttcttgttt 14949401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 34 - 125
Target Start/End: Complemental strand, 49251352 - 49251262
Alignment:
Q  34 gacaatgtaaaacaactttacaatatcaaccaattataattatctcattagacacatcatcttaagtgttaaaaatagaaaaaatcaaataa 125  Q
    |||||| ||||||||||||||| |||||||||||||  ||  ||  ||||||||||||||||||||||||||||| || |||||||||||||    
T  49251352 gacaatataaaacaactttacactatcaaccaattaacatcgtccaattagacacatcatcttaagtgttaaaaaaag-aaaaatcaaataa 49251262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 17 - 103
Target Start/End: Complemental strand, 50616365 - 50616279
Alignment:
Q  17 attaattagaatagactgacaatgtaaaacaactttacaatatcaaccaattataattatctcattagacacatcatcttaagtgtt 103  Q
    ||||||||||||| | ||| | ||||||||||||||||| ||||||||||||| ||| |||  |||||||||||| |||||||||||    
T  50616365 attaattagaataaattgatagtgtaaaacaactttacactatcaaccaattaaaatcatcaaattagacacatcgtcttaagtgtt 50616279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 17 - 103
Target Start/End: Complemental strand, 50624193 - 50624107
Alignment:
Q  17 attaattagaatagactgacaatgtaaaacaactttacaatatcaaccaattataattatctcattagacacatcatcttaagtgtt 103  Q
    ||||||||||||| | ||| | ||||||||||||||||| ||||||||||||| ||| |||  |||||||||||| |||||||||||    
T  50624193 attaattagaataaattgatagtgtaaaacaactttacactatcaaccaattaaaatcatcaaattagacacatcgtcttaagtgtt 50624107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 17 - 125
Target Start/End: Complemental strand, 270694 - 270586
Alignment:
Q  17 attaattagaatagactgacaatgtaaaacaactttacaatatcaaccaattataattatctcattagacacatcatcttaagtgttaaaaatagaaaaa 116  Q
    ||||||||||||||||| ||  ||||||| || |||||| |||||| |||||| ||| |||  |||| |||| |  |||||||||||||||| ||||| |    
T  270694 attaattagaatagactaacggtgtaaaataagtttacactatcaaacaattaaaatcatccaattaaacaccttttcttaagtgttaaaaaaagaaaca 270595  T
Q  117 atcaaataa 125  Q
    |||||||||    
T  270594 atcaaataa 270586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 292 - 360
Target Start/End: Original strand, 14939316 - 14939384
Alignment:
Q  292 tttgtaattggaagggtcggttttcttatattgagagggcctgaattttctgcacaattgttcttgttt 360  Q
    ||||||||||| |||||||||| |  ||||||| |||||||| |||||||||||||||| |||||||||    
T  14939316 tttgtaattggcagggtcggttcttctatattgggagggcctaaattttctgcacaattattcttgttt 14939384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 292 - 360
Target Start/End: Original strand, 14944560 - 14944628
Alignment:
Q  292 tttgtaattggaagggtcggttttcttatattgagagggcctgaattttctgcacaattgttcttgttt 360  Q
    ||||||||||| |||||||||| |  ||||||| |||||||| |||||||||||||||| |||||||||    
T  14944560 tttgtaattggcagggtcggttcttctatattgggagggcctaaattttctgcacaattattcttgttt 14944628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 17 - 92
Target Start/End: Complemental strand, 14945725 - 14945650
Alignment:
Q  17 attaattagaatagactgacaatgtaaaacaactttacaatatcaaccaattataattatctcattagacacatca 92  Q
    |||||||| |||||||||| | | ||||| || |||||| ||||||||||||| |||||||| |||| ||||||||    
T  14945725 attaattaaaatagactgagagtataaaataagtttacactatcaaccaattaaaattatctaattaaacacatca 14945650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 92
Target Start/End: Complemental strand, 14940483 - 14940408
Alignment:
Q  17 attaattagaatagactgacaatgtaaaacaactttacaatatcaaccaattataattatctcattagacacatca 92  Q
    ||||||||||||| ||||||| | ||||| || | |||| |||||| |||||| |||||||| |||| ||||||||    
T  14940483 attaattagaataaactgacagtataaaataagtctacactatcaaacaattaaaattatctaattaaacacatca 14940408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 92
Target Start/End: Complemental strand, 14950490 - 14950415
Alignment:
Q  17 attaattagaatagactgacaatgtaaaacaactttacaatatcaaccaattataattatctcattagacacatca 92  Q
    ||||||||||||| ||||||| | ||||| || | |||| |||||| |||||| |||||||| |||| ||||||||    
T  14950490 attaattagaataaactgacagtataaaataagtctacactatcaaacaattaaaattatctaattaaacacatca 14950415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 92
Target Start/End: Complemental strand, 14954731 - 14954656
Alignment:
Q  17 attaattagaatagactgacaatgtaaaacaactttacaatatcaaccaattataattatctcattagacacatca 92  Q
    ||||||||||||| ||||||| | ||||| || | |||| |||||| |||||| |||||||| |||| ||||||||    
T  14954731 attaattagaataaactgacagtataaaataagtctacactatcaaacaattaaaattatctaattaaacacatca 14954656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 27 - 78
Target Start/End: Original strand, 42105669 - 42105720
Alignment:
Q  27 atagactgacaatgtaaaacaactttacaatatcaaccaattataattatct 78  Q
    |||||||||||||||||||||| |||||| | ||||||||||| ||| ||||    
T  42105669 atagactgacaatgtaaaacaagtttacactgtcaaccaattaaaatcatct 42105720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 63; Significance: 3e-27; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 17 - 201
Target Start/End: Complemental strand, 36719054 - 36718871
Alignment:
Q  17 attaattagaatagactgacaatgtaaaacaactttacaatatcaaccaattataattatctcattagacacatcatcttaagtgttaaaaatagaaaaa 116  Q
    ||||||||||||||||||||| |||||||||| ||||||  |||||||||||| | | |||  |||||||||||||||||||||||||||||| | ||||    
T  36719054 attaattagaatagactgaca-tgtaaaacaattttacaccatcaaccaattaaattcatccaattagacacatcatcttaagtgttaaaaat-ggaaaa 36718957  T
Q  117 atcaaataannnnnnnnncaataaatgtcttctacccatgtttcttaatttggtcatttgattta-acattttcaatctgcattat 201  Q
    |||||||||          ||||| |||||||||||||  ||| ||||||||| |||||||||||  |||||| ||||| ||||||    
T  36718956 atcaaataaaatcttttctaataattgtcttctacccacattttttaatttggacatttgatttagccatttttaatcttcattat 36718871  T

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Target: chr7; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 17 - 125
Target Start/End: Original strand, 3868182 - 3868290
Alignment:
Q  17 attaattagaatagactgacaatgtaaaacaactttacaatatcaaccaattataattatctcattagacacatcatcttaagtgttaaaaatagaaaaa 116  Q
    ||||||||||||||||||||| |||||||||| ||| || ||||||||||||| ||| | |  |||| |||||||||||||||| |||||||||| ||||    
T  3868182 attaattagaatagactgacagtgtaaaacaattttgcactatcaaccaattaaaatcaccaaattaaacacatcatcttaagtattaaaaataggaaaa 3868281  T
Q  117 atcaaataa 125  Q
    |||||||||    
T  3868282 atcaaataa 3868290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 17 - 67
Target Start/End: Original strand, 36718247 - 36718297
Alignment:
Q  17 attaattagaatagactgacaatgtaaaacaactttacaatatcaaccaat 67  Q
    ||||||||||||||||||||| |||||||||| ||||||  ||||||||||    
T  36718247 attaattagaatagactgacattgtaaaacaattttacaccatcaaccaat 36718297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 1e-20; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 17 - 116
Target Start/End: Original strand, 8790543 - 8790642
Alignment:
Q  17 attaattagaatagactgacaatgtaaaacaactttacaatatcaaccaattataattatctcattagacacatcatcttaagtgttaaaaatagaaaaa 116  Q
    ||||||||||||| ||||| ||||||||| ||||||||| |||||| | |||| ||| | |  ||||||||||||||||||||||||||||| |||||||    
T  8790543 attaattagaatatactgataatgtaaaataactttacactatcaatcgattagaatcacccaattagacacatcatcttaagtgttaaaaaaagaaaaa 8790642  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 17 - 123
Target Start/End: Complemental strand, 16939170 - 16939066
Alignment:
Q  17 attaattagaatagactgacaatgtaaaacaactttacaatatcaaccaattataattatctcattagacacatcatcttaagtgttaaaaatagaaaaa 116  Q
    |||||||||||||||  || | |||||||||| |||||| | ||||||||||| ||| |    |||||||||||||  |||| |||| ||||||||||||    
T  16939170 attaattagaatagatcgatagtgtaaaacaattttacactgtcaaccaattaaaatcactaaattagacacatcagtttaa-tgtt-aaaatagaaaaa 16939073  T
Q  117 atcaaat 123  Q
    |||||||    
T  16939072 atcaaat 16939066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 136 - 201
Target Start/End: Original strand, 17636873 - 17636939
Alignment:
Q  136 aataaatgtcttctacccatgtttcttaatttggtcatttgattta-acattttcaatctgcattat 201  Q
    ||||| ||||||||||||| |||| ||||||||| |||||||||||  |||||| ||||| ||||||    
T  17636873 aataattgtcttctacccacgttttttaatttggacatttgatttagccatttttaatcttcattat 17636939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 58 - 114
Target Start/End: Original strand, 4942898 - 4942954
Alignment:
Q  58 atcaaccaattataattatctcattagacacatcatcttaagtgttaaaaatagaaa 114  Q
    |||||||||||| ||||||    |||||||||||| | |||||||||||||||||||    
T  4942898 atcaaccaattaaaattattcttttagacacatcaacgtaagtgttaaaaatagaaa 4942954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 17 - 104
Target Start/End: Original strand, 35413582 - 35413669
Alignment:
Q  17 attaattagaatagactgacaatgtaaaacaactttacaatatcaaccaattataattatctcattagacacatcatcttaagtgtta 104  Q
    ||||||||||||||||| ||| ||||||||||||||||| ||||||||||||| | | |||  |||| ||||||||||||||||||||    
T  35413582 attaattagaatagactaacagtgtaaaacaactttacactatcaaccaattaaattcatccaattaaacacatcatcttaagtgtta 35413669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 136 - 201
Target Start/End: Original strand, 35413711 - 35413777
Alignment:
Q  136 aataaatgtcttctacccatgtttcttaatttggtcatttgattta-acattttcaatctgcattat 201  Q
    ||||| ||||||||||||| |||| ||||||||| |||||||||||  |||||| ||||| ||||||    
T  35413711 aataattgtcttctacccacgttttttaatttggacatttgatttagccatttttaatcttcattat 35413777  T

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Target: chr6 (Bit Score: 47; Significance: 1e-17; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 17 - 125
Target Start/End: Original strand, 4171177 - 4171282
Alignment:
Q  17 attaattagaatagactgacaatgtaaaacaactttacaatatcaaccaattataattatctcattagacacatcatcttaagtgttaaaaatagaaaaa 116  Q
    |||||||| ||| |||||||||||||||  ||||||||| ||||| ||||||| |||  | | ||||||||||||| |||||   |||||||||||||||    
T  4171177 attaattataatggactgacaatgtaaacaaactttacactatcatccaattaaaatcgtttaattagacacatcagcttaa---ttaaaaatagaaaaa 4171273  T
Q  117 atcaaataa 125  Q
    |||||||||    
T  4171274 atcaaataa 4171282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 33 - 125
Target Start/End: Original strand, 4226789 - 4226878
Alignment:
Q  33 tgacaatgtaaaacaactttacaatatcaaccaattataattatctcattagacacatcatcttaagtgttaaaaatagaaaaaatcaaataa 125  Q
    |||||||||||| |||||||||| ||||| ||||||| |||  | | ||||||||||||| |||||   ||||||||||||||||||||||||    
T  4226789 tgacaatgtaaaccaactttacactatcatccaattaaaatcgtttaattagacacatcagcttaa---ttaaaaatagaaaaaatcaaataa 4226878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 17 - 125
Target Start/End: Complemental strand, 16914379 - 16914272
Alignment:
Q  17 attaattagaatagactgacaatgtaaaacaactttacaatatcaaccaattataattatctcattagacacatcatcttaagtgttaaaaatagaaaaa 116  Q
    ||||||| ||||||||  ||| | |||||||| |||||| ||||||||||| | |||||||  |||| |||| || |||||||||||||||| || ||||    
T  16914379 attaattggaatagacccacattctaaaacaagtttacactatcaaccaataaaaattatccaattaaacacctcctcttaagtgttaaaaaaag-aaaa 16914281  T
Q  117 atcaaataa 125  Q
    |||||||||    
T  16914280 atcaaataa 16914272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 69
Target Start/End: Complemental strand, 4175916 - 4175864
Alignment:
Q  17 attaattagaatagactgacaatgtaaaacaactttacaatatcaaccaatta 69  Q
    ||||||| ||||||||||||| ||||||||||||||||| | ||| |||||||    
T  4175916 attaatttgaatagactgacagtgtaaaacaactttacactgtcagccaatta 4175864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 22 - 98
Target Start/End: Original strand, 23074804 - 23074880
Alignment:
Q  22 ttagaatagactgacaatgtaaaacaactttacaatatcaaccaattataattatctcattagacacatcatcttaa 98  Q
    |||||||||||||| |||||||||||| |||||| ||||||||||||| ||| | |  ||||||||||| |||||||    
T  23074804 ttagaatagactgagaatgtaaaacaattttacattatcaaccaattaaaatcacccaattagacacataatcttaa 23074880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 101
Target Start/End: Complemental strand, 2414439 - 2414355
Alignment:
Q  17 attaattagaatagactgacaatgtaaaacaactttacaatatcaaccaattataattatctcattagacacatcatcttaagtg 101  Q
    |||||||| |||||||||||| ||||||| || |||||| | ||||||||||| ||| ||   |||| |||| ||||||||||||    
T  2414439 attaattataatagactgacagtgtaaaataagtttacattgtcaaccaattaaaatcattcaattaaacacctcatcttaagtg 2414355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 374 - 421
Target Start/End: Complemental strand, 27179091 - 27179044
Alignment:
Q  374 gtcagaaaggatctcgcttggagtcatgaggactaagttttgcttcat 421  Q
    ||||||||||||||| ||||||||||||||||| || ||||| |||||    
T  27179091 gtcagaaaggatctcacttggagtcatgaggaccaaattttggttcat 27179044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 30 - 105
Target Start/End: Complemental strand, 27179195 - 27179120
Alignment:
Q  30 gactgacaatgtaaaacaactttacaatatcaaccaattataattatctcattagacacatcatcttaagtgttaa 105  Q
    |||||||||||||||| || |||||| ||||||| ||||| ||| ||   |||||| |||||| ||||||||||||    
T  27179195 gactgacaatgtaaaataattttacactatcaactaattaaaatcattcaattagatacatcaacttaagtgttaa 27179120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 16 - 125
Target Start/End: Original strand, 2413214 - 2413321
Alignment:
Q  16 aattaattagaatagactgacaatgtaaaacaactttacaatatcaaccaattataattatctcattagacacatcatcttaagtgttaaaaatagaaaa 115  Q
    |||||||||||||||||||||| ||||||| || |||||| | || | |||||| ||| |||  |||| |||| || ||||  |||||||||| |  |||    
T  2413214 aattaattagaatagactgacagtgtaaaataaatttacattgtcgatcaattaaaatcatccaattaaacacctcgtctt--gtgttaaaaaaaataaa 2413311  T
Q  116 aatcaaataa 125  Q
    ||||||||||    
T  2413312 aatcaaataa 2413321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 17 - 55
Target Start/End: Complemental strand, 13618777 - 13618739
Alignment:
Q  17 attaattagaatagactgacaatgtaaaacaactttaca 55  Q
    ||||||||||||||| ||||| |||||||||||||||||    
T  13618777 attaattagaatagattgacagtgtaaaacaactttaca 13618739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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