View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20661_low_13 (Length: 372)
Name: NF20661_low_13
Description: NF20661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20661_low_13 |
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Alignment Details
Target: chr6 (Bit Score: 144; Significance: 1e-75; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 55 - 202
Target Start/End: Original strand, 15136899 - 15137046
Alignment:
| Q |
55 |
cttcctaaaaacattgatgaatgaacttagagagtagttataatcacaccattatcacaattttttaaaactttttaagtgaatgttacaagccttactc |
154 |
Q |
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| T |
15136899 |
cttcctaaaaacattgatgaatgaacttagagagtagttataatcacaccattatcacaattttttaaaactttttaagtgaatgttacaagccttactc |
15136998 |
T |
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| Q |
155 |
tttcacagagtggcgacactggtttagaattggagaaacctagaacca |
202 |
Q |
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| T |
15136999 |
tttcacagagtggcggcactggtttagaattggagaaacctagaacca |
15137046 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 230 - 359
Target Start/End: Original strand, 15138186 - 15138315
Alignment:
| Q |
230 |
gaaccttagctgctgctccttccttttccaatctcagccaccacgatgtagatctagaagatggtggtgcgaggagagtgtttctccgcgccaccgtcat |
329 |
Q |
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| T |
15138186 |
gaaccttagctgccactccttccttttccaatctcagccaccacgatgtagatctagaagatggtggtgcgaggagagtgtttctccgcgccaccatcat |
15138285 |
T |
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| Q |
330 |
accctttttcctgttgtgctccttttgtct |
359 |
Q |
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| T |
15138286 |
acacttcttcctatggcgctccttttgtct |
15138315 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 65; Significance: 2e-28; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 224 - 359
Target Start/End: Original strand, 20743386 - 20743522
Alignment:
| Q |
224 |
gccccggaaccttagctgctgctccttccttttccaatctcagccaccacgatgtagatctagaagatggtggtgcgagg-agagtgtttctccgcgcca |
322 |
Q |
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| T |
20743386 |
gcccctgaaccttagctgtcgctctttccttttccaatctcagacaccatgatgtagatctaggagatggtggtgtgaggaagaatgtttcttcgcgcca |
20743485 |
T |
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| Q |
323 |
ccgtcataccctttttcctgttgtgctccttttgtct |
359 |
Q |
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| T |
20743486 |
ccgtcacacccttcttcctctggcgctcctttcgtct |
20743522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 219 - 335
Target Start/End: Original strand, 20735842 - 20735959
Alignment:
| Q |
219 |
ccgccgccccggaaccttagctgctgctccttccttttccaatctcagccaccacgatgtagatctagaagatggtggtgcgag-gagagtgtttctccg |
317 |
Q |
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|||| ||||| ||||||||| || |||| ||||||||||||||||| |||||| ||||||||||||| ||||| ||||||||| ||| ||||||| || |
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| T |
20735842 |
ccgctgcccctgaaccttagatgtcgctctttccttttccaatctcaaccaccatgatgtagatctaggagatgttggtgcgagaaagaatgtttcttcg |
20735941 |
T |
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| Q |
318 |
cgccaccgtcataccctt |
335 |
Q |
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| T |
20735942 |
cgccaccgtcacaccctt |
20735959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 262 - 318
Target Start/End: Complemental strand, 17665307 - 17665251
Alignment:
| Q |
262 |
ctcagccaccacgatgtagatctagaagatggtggtgcgaggagagtgtttctccgc |
318 |
Q |
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|||| ||||||||||||||||| | |||||||| ||||||||||| ||||||||| |
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|
| T |
17665307 |
ctcaaccaccacgatgtagatccgggagatggtgatgcgaggagagcttttctccgc |
17665251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 64; Significance: 7e-28; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 244 - 335
Target Start/End: Original strand, 3733204 - 3733295
Alignment:
| Q |
244 |
gctccttccttttccaatctcagccaccacgatgtagatctagaagatggtggtgcgaggagagtgtttctccgcgccaccgtcataccctt |
335 |
Q |
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| T |
3733204 |
gctcctcccttttccaatctcagccaccacgatgtagatttaggagatggtggtgcgaggagagcttttctccgcaccaccgtcacaccctt |
3733295 |
T |
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