View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20661_low_16 (Length: 329)

Name: NF20661_low_16
Description: NF20661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20661_low_16
NF20661_low_16
[»] chr1 (5 HSPs)
chr1 (105-327)||(42167536-42167758)
chr1 (18-106)||(29267782-29267870)
chr1 (23-104)||(3780904-3780984)
chr1 (57-106)||(17585998-17586047)
chr1 (43-105)||(17145001-17145063)
[»] chr5 (6 HSPs)
chr5 (18-107)||(42885134-42885223)
chr5 (18-97)||(16666607-16666686)
chr5 (17-104)||(28246799-28246887)
chr5 (51-101)||(1944925-1944975)
chr5 (20-104)||(26502597-26502682)
chr5 (72-104)||(16856025-16856057)
[»] chr4 (9 HSPs)
chr4 (18-106)||(29284733-29284821)
chr4 (18-104)||(5486437-5486523)
chr4 (18-104)||(44820861-44820947)
chr4 (20-104)||(52596712-52596797)
chr4 (20-104)||(18902527-18902612)
chr4 (20-104)||(1142971-1143056)
chr4 (20-106)||(221079-221166)
chr4 (32-81)||(34442107-34442157)
chr4 (20-106)||(46394664-46394747)
[»] chr3 (7 HSPs)
chr3 (18-105)||(24735957-24736044)
chr3 (18-104)||(29839899-29839985)
chr3 (18-104)||(3857905-3857992)
chr3 (23-104)||(29807931-29808013)
chr3 (51-105)||(26042171-26042225)
chr3 (23-103)||(23217404-23217485)
chr3 (72-104)||(44791580-44791612)
[»] chr8 (3 HSPs)
chr8 (18-104)||(41287504-41287590)
chr8 (20-101)||(6801555-6801637)
chr8 (23-95)||(41138067-41138140)
[»] chr7 (9 HSPs)
chr7 (18-104)||(35445459-35445545)
chr7 (18-104)||(31589779-31589865)
chr7 (22-104)||(21236541-21236623)
chr7 (20-104)||(45884976-45885061)
chr7 (43-104)||(2619855-2619915)
chr7 (43-100)||(21859046-21859103)
chr7 (43-105)||(778352-778414)
chr7 (18-66)||(43127421-43127470)
chr7 (72-105)||(43127466-43127499)
[»] chr2 (4 HSPs)
chr2 (18-104)||(15696934-15697020)
chr2 (43-101)||(12698577-12698635)
chr2 (24-106)||(15676304-15676387)
chr2 (29-101)||(4622371-4622444)
[»] chr6 (2 HSPs)
chr6 (20-101)||(4333522-4333604)
chr6 (49-104)||(9578485-9578540)
[»] scaffold0057 (1 HSPs)
scaffold0057 (46-102)||(50118-50174)


Alignment Details
Target: chr1 (Bit Score: 203; Significance: 1e-111; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 105 - 327
Target Start/End: Original strand, 42167536 - 42167758
Alignment:
Q  105 atggagagagtttgacatttgacaacactctaacaaagaatattggtcctactttgatgcatgtttcaactatgttgtggagttcttaaactttgatgag 204  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||    
T  42167536 atggagagagtttgacatttgacaacactctaacaaagaatattggtcctactttgatgcatatttcaactatgttgtcgagttcttaaactttgatgag 42167635  T
Q  205 ctctttttatcctttatttttcaaagtctaaaactttattagtttaaggatattgaatcttttaggagattaattggcgaactcttatatcttaacataa 304  Q
    | ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  42167636 ccctttttatcatttatttttcaaagtctaaaactttattagtttaaggatattgaatcgtttaggagattaattggcgaactcttatatcttaacataa 42167735  T
Q  305 caagacttgatatcacattcatc 327  Q
    |||||||||||||||||||||||    
T  42167736 caagacttgatatcacattcatc 42167758  T

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Target: chr1; HSP #2
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 18 - 106
Target Start/End: Complemental strand, 29267870 - 29267782
Alignment:
Q  18 catggatacccgtttagctacccgtccgtgcccgtgatggattttacccgcgggtacccatgggcatgggtatttttgccacccctaat 106  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29267870 catggatacccgtttagctacccgtccgtgcccgtgatggattttacccgcgggtacccatgggcatgggtatttttgccacccctaat 29267782  T

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Target: chr1; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 23 - 104
Target Start/End: Original strand, 3780904 - 3780984
Alignment:
Q  23 atacccgtttagctacccgtccgtgcccgtgatggattttacccgcgggtacccatgggcatgggtatttttgccaccccta 104  Q
    ||||||||||||||||||| |||||||||||||| ||||||| |||||||| ||||| ||||| |||||||||||| |||||    
T  3780904 atacccgtttagctacccgcccgtgcccgtgatgaattttactcgcgggta-ccatgagcatgtgtatttttgccatcccta 3780984  T

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Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 57 - 106
Target Start/End: Complemental strand, 17586047 - 17585998
Alignment:
Q  57 gattttacccgcgggtacccatgggcatgggtatttttgccacccctaat 106  Q
    ||||||| |||||||||| ||||| |||||||||||||||||||||||||    
T  17586047 gattttatccgcgggtacacatggacatgggtatttttgccacccctaat 17585998  T

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Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 43 - 105
Target Start/End: Complemental strand, 17145063 - 17145001
Alignment:
Q  43 ccgtgcccgtgatggattttacccgcgggtacccatgggcatgggtatttttgccacccctaa 105  Q
    ||||||||||||||||||||| || |||| || | |||||||| |||||||||||| ||||||    
T  17145063 ccgtgcccgtgatggattttatccacgggcactcgtgggcatgcgtatttttgccatccctaa 17145001  T

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Target: chr5 (Bit Score: 90; Significance: 2e-43; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 18 - 107
Target Start/End: Complemental strand, 42885223 - 42885134
Alignment:
Q  18 catggatacccgtttagctacccgtccgtgcccgtgatggattttacccgcgggtacccatgggcatgggtatttttgccacccctaatg 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42885223 catggatacccgtttagctacccgtccgtgcccgtgatggattttacccgcgggtacccatgggcatgggtatttttgccacccctaatg 42885134  T

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Target: chr5; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 18 - 97
Target Start/End: Original strand, 16666607 - 16666686
Alignment:
Q  18 catggatacccgtttagctacccgtccgtgcccgtgatggattttacccgcgggtacccatgggcatgggtatttttgcc 97  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16666607 catggatacccgtttagctacccgtccgtacccgtgatggattttacccgcgggtacccatgggcatgggtatttttgcc 16666686  T

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Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 17 - 104
Target Start/End: Complemental strand, 28246887 - 28246799
Alignment:
Q  17 acatggatacccgtttagctacccgtcc-gtgcccgtgatggattttacccgcgggtacccatgggcatgggtatttttgccaccccta 104  Q
    ||||||||||||||||||||| ||| || ||| ||||||   |||||||   ||||||||| ||| |||||||||||||||||||||||    
T  28246887 acatggatacccgtttagctatccgccccgtgtccgtgacaaattttacttacgggtacccgtggacatgggtatttttgccaccccta 28246799  T

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Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 51 - 101
Target Start/End: Complemental strand, 1944975 - 1944925
Alignment:
Q  51 gtgatggattttacccgcgggtacccatgggcatgggtatttttgccaccc 101  Q
    |||| ||||||||||| ||||||||| |||||||| |||||||||||||||    
T  1944975 gtgacggattttacccacgggtacccgtgggcatgagtatttttgccaccc 1944925  T

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Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 20 - 104
Target Start/End: Complemental strand, 26502682 - 26502597
Alignment:
Q  20 tggatacccgtttagctacccgt-ccgtgcccgtgatggattttacccgcgggtacccatgggcatgggtatttttgccaccccta 104  Q
    ||||||| ||||||||||||| | ||||| |  |||  ||| |||||| ||||||||| |||||||| ||||||||||||||||||    
T  26502682 tggatactcgtttagctacccattccgtgtctatgacagatcttacccacgggtacccgtgggcatgtgtatttttgccaccccta 26502597  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 72 - 104
Target Start/End: Original strand, 16856025 - 16856057
Alignment:
Q  72 tacccatgggcatgggtatttttgccaccccta 104  Q
    ||||||||||||||||||||| |||||||||||    
T  16856025 tacccatgggcatgggtatttctgccaccccta 16856057  T

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Target: chr4 (Bit Score: 89; Significance: 7e-43; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 18 - 106
Target Start/End: Complemental strand, 29284821 - 29284733
Alignment:
Q  18 catggatacccgtttagctacccgtccgtgcccgtgatggattttacccgcgggtacccatgggcatgggtatttttgccacccctaat 106  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29284821 catggatacccgtttagctacccgtccgtgcccgtgatggattttacccgcgggtacccatgggcatgggtatttttgccacccctaat 29284733  T

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Target: chr4; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 18 - 104
Target Start/End: Complemental strand, 5486523 - 5486437
Alignment:
Q  18 catggatacccgtttagctacccgtccgtgcccgtgatggattttacccgcgggtacccatgggcatgggtatttttgccaccccta 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  5486523 catggatacccgtttagctacccgtccgtgcccgtgatggattttacccgcgggtacccatgggcatggatatttttgccaccccta 5486437  T

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Target: chr4; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 18 - 104
Target Start/End: Original strand, 44820861 - 44820947
Alignment:
Q  18 catggatacccgtttagctacccgtccgtgcccgtgatggattttacccgcgggtacccatgggcatgggtatttttgccaccccta 104  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  44820861 catggatacccgtttagctacccgtccgtgcccgtgatggattttacccgcgggtatccatgggcatgggtatttttgccaccccta 44820947  T

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Target: chr4; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 20 - 104
Target Start/End: Complemental strand, 52596797 - 52596712
Alignment:
Q  20 tggatacccgtttagctacccg-tccgtgcccgtgatggattttacccgcgggtacccatgggcatgggtatttttgccaccccta 104  Q
    |||||||||||||||||||||| ||||||  ||||| |||||||| ||  |||||||| ||||||||||||||||||||| |||||    
T  52596797 tggatacccgtttagctacccgctccgtgttcgtgacggattttatccatgggtacccgtgggcatgggtatttttgccatcccta 52596712  T

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Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 20 - 104
Target Start/End: Complemental strand, 18902612 - 18902527
Alignment:
Q  20 tggatacccgtttagctacccgtc-cgtgcccgtgatggattttacccgcgggtacccatgggcatgggtatttttgccaccccta 104  Q
    |||||| || |||||| ||||||| ||||||| ||||||||||||||| | |||| || |||||||| ||||||||||||||||||    
T  18902612 tggatatccatttagccacccgtctcgtgcccatgatggattttacccacaggtatccgtgggcatgagtatttttgccaccccta 18902527  T

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Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 20 - 104
Target Start/End: Complemental strand, 1143056 - 1142971
Alignment:
Q  20 tggatacccgtttagctacccgtcc-gtgcccgtgatggattttacccgcgggtacccatgggcatgggtatttttgccaccccta 104  Q
    |||||| |||||||||||||||||| ||| | |||| ||||||||||| ||||||| | |||| ||| |||| |||||||| ||||    
T  1143056 tggatatccgtttagctacccgtcccgtgtcggtgacggattttacccacgggtactcgtgggtatgagtatgtttgccactccta 1142971  T

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Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 20 - 106
Target Start/End: Complemental strand, 221166 - 221079
Alignment:
Q  20 tggatacccgtttagctacccgtcc-gtgcccgtgatggattttacccgcgggtacccatgggcatgggtatttttgccacccctaat 106  Q
    ||||||| |||||||||||||  || |||||| | ||||||||||||| |||  |||| ||| |||| ||||||||| ||||||||||    
T  221166 tggatactcgtttagctacccaccctgtgcccataatggattttacccacggacacccgtggacatgagtatttttgtcacccctaat 221079  T

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Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 32 - 81
Target Start/End: Complemental strand, 34442157 - 34442107
Alignment:
Q  32 tagctacccgtcc-gtgcccgtgatggattttacccgcgggtacccatggg 81  Q
    ||||||||||||| ||| |||||| ||||||||||| ||||||||||||||    
T  34442157 tagctacccgtcccgtgtccgtgacggattttacccacgggtacccatggg 34442107  T

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Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 106
Target Start/End: Complemental strand, 46394747 - 46394664
Alignment:
Q  20 tggatacccgtttagctacccgtcc-gtgcccgtgatggattttacccgcgggtacccatgggcatgggtatttttgccacccctaat 106  Q
    |||||||||| ||||||| |||||| || ||||||| ||||||||||| ||    ||| ||| ||| |||||||||||||||||||||    
T  46394747 tggatacccgcttagctatccgtcccgtccccgtgacggattttacccacg----cccgtggacataggtatttttgccacccctaat 46394664  T

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Target: chr3 (Bit Score: 88; Significance: 3e-42; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 18 - 105
Target Start/End: Original strand, 24735957 - 24736044
Alignment:
Q  18 catggatacccgtttagctacccgtccgtgcccgtgatggattttacccgcgggtacccatgggcatgggtatttttgccacccctaa 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24735957 catggatacccgtttagctacccgtccgtgcccgtgatggattttacccgcgggtacccatgggcatgggtatttttgccacccctaa 24736044  T

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Target: chr3; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 18 - 104
Target Start/End: Original strand, 29839899 - 29839985
Alignment:
Q  18 catggatacccgtttagctacccgtccgtgcccgtgatggattttacccgcgggtacccatgggcatgggtatttttgccaccccta 104  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29839899 catggatacccgtttagctacccgtccgtgcccgtgatggattttacccgcgggtacccatgggcatgggtatttttgccaccccta 29839985  T

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Target: chr3; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 18 - 104
Target Start/End: Complemental strand, 3857992 - 3857905
Alignment:
Q  18 catggatacccgtttagctacccgtcc-gtgcccgtgatggattttacccgcgggtacccatgggcatgggtatttttgccaccccta 104  Q
    ||||||||||||||| |||||||| || ||||||||||||||| |||||| ||| ||||| ||||||| |||| ||||||||||||||    
T  3857992 catggatacccgtttcgctacccgccccgtgcccgtgatggatattacccacggatacccgtgggcattggtacttttgccaccccta 3857905  T

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Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 23 - 104
Target Start/End: Complemental strand, 29808013 - 29807931
Alignment:
Q  23 atacccgtttagctacccgtcc-gtgcccgtgatggattttacccgcgggtacccatgggcatgggtatttttgccaccccta 104  Q
    |||||| ||||||||| || || |||||||||| |||||||||||  || ||||| |||||||| ||||||||||||||||||    
T  29808013 atacccatttagctactcgccccgtgcccgtgacggattttacccatggatacccgtgggcatgagtatttttgccaccccta 29807931  T

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Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 51 - 105
Target Start/End: Original strand, 26042171 - 26042225
Alignment:
Q  51 gtgatggattttacccgcgggtacccatgggcatgggtatttttgccacccctaa 105  Q
    |||| |||||||| || | ||||||| ||||||||||||||||||||||||||||    
T  26042171 gtgacggattttatccacaggtacccgtgggcatgggtatttttgccacccctaa 26042225  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 103
Target Start/End: Original strand, 23217404 - 23217485
Alignment:
Q  23 atacccgtttagctacccgtcc-gtgcccgtgatggattttacccgcgggtacccatgggcatgggtatttttgccacccct 103  Q
    ||||||||||||||||| | || ||||  |||| | |||||||||||||||| || || ||  |||||||||||||||||||    
T  23217404 atacccgtttagctacctgccccgtgcatgtgacgaattttacccgcgggtatccgtgagcgggggtatttttgccacccct 23217485  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 72 - 104
Target Start/End: Original strand, 44791580 - 44791612
Alignment:
Q  72 tacccatgggcatgggtatttttgccaccccta 104  Q
    |||||||||||||||||||||||| ||||||||    
T  44791580 tacccatgggcatgggtatttttggcaccccta 44791612  T

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Target: chr8 (Bit Score: 87; Significance: 1e-41; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 18 - 104
Target Start/End: Complemental strand, 41287590 - 41287504
Alignment:
Q  18 catggatacccgtttagctacccgtccgtgcccgtgatggattttacccgcgggtacccatgggcatgggtatttttgccaccccta 104  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41287590 catggatacccgtttagctacccgtccgtgcccgtgatggattttacccgcgggtacccatgggcatgggtatttttgccaccccta 41287504  T

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Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 20 - 101
Target Start/End: Original strand, 6801555 - 6801637
Alignment:
Q  20 tggatacccgtttagctacccgtcc-gtgcccgtgatggattttacccgcgggtacccatgggcatgggtatttttgccaccc 101  Q
    ||||||||||||||||||| || || ||||| |||| ||||||||||| || ||||   ||||||||||||||||||||||||    
T  6801555 tggatacccgtttagctactcgccccgtgcctgtgacggattttacccacgagtacatgtgggcatgggtatttttgccaccc 6801637  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 95
Target Start/End: Original strand, 41138067 - 41138140
Alignment:
Q  23 atacccgtttagctacccg-tccgtgcccgtgatggattttacccgcgggtacccatgggcatgggtatttttg 95  Q
    ||||||||||| ||| ||| || ||||||||||||||||||||||  || ||||  |||| |||||||||||||    
T  41138067 atacccgtttaactatccgctctgtgcccgtgatggattttacccatggatacctgtgggtatgggtatttttg 41138140  T

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Target: chr7 (Bit Score: 87; Significance: 1e-41; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 18 - 104
Target Start/End: Original strand, 35445459 - 35445545
Alignment:
Q  18 catggatacccgtttagctacccgtccgtgcccgtgatggattttacccgcgggtacccatgggcatgggtatttttgccaccccta 104  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35445459 catggatacccgtttagctacccgtccgtgcccgtgatggattttacccgcgggtacccatgggcatgggtatttttgccaccccta 35445545  T

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Target: chr7; HSP #2
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 18 - 104
Target Start/End: Complemental strand, 31589865 - 31589779
Alignment:
Q  18 catggatacccgtttagctacccgtccgtgcccgtgatggattttacccgcgggtacccatgggcatgggtatttttgccaccccta 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||    
T  31589865 catggatacccgtttagctacccgtccgtgcccgtgatggattttacccacgggtatccatgggcatgggtatttttgccaccccta 31589779  T

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Target: chr7; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 22 - 104
Target Start/End: Complemental strand, 21236623 - 21236541
Alignment:
Q  22 gatacccgtttagctacccgtcc-gtgcccgtgatggattttacccgcgggtacccatgggcatgggtatttttgccaccccta 104  Q
    ||||||||||||||||||| ||| |||||||||| | ||||||||| |||||| || |||||||||||||||||||||||||||    
T  21236623 gatacccgtttagctacccatcccgtgcccgtgacg-attttacccacgggtatccgtgggcatgggtatttttgccaccccta 21236541  T

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Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 20 - 104
Target Start/End: Complemental strand, 45885061 - 45884976
Alignment:
Q  20 tggatacccgtttagctacccgtcc-gtgcccgtgatggattttacccgcgggtacccatgggcatgggtatttttgccaccccta 104  Q
    |||||| ||||||||||||| |||| ||  |||||| |||||||||| ||||| |||| |||||||||||||||||| ||||||||    
T  45885061 tggatatccgtttagctacctgtcccgtttccgtgacggattttacctgcgggcacccgtgggcatgggtatttttgtcaccccta 45884976  T

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Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 43 - 104
Target Start/End: Original strand, 2619855 - 2619915
Alignment:
Q  43 ccgtgcccgtgatggattttacccgcgggtacccatgggcatgggtatttttgccaccccta 104  Q
    ||||||| |||| ||||||||||| |||||||||| ||||||||||||||||||| ||||||    
T  2619855 ccgtgcctgtgagggattttacccacgggtaccca-gggcatgggtatttttgccgccccta 2619915  T

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Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 43 - 100
Target Start/End: Complemental strand, 21859103 - 21859046
Alignment:
Q  43 ccgtgcccgtgatggattttacccgcgggtacccatgggcatgggtatttttgccacc 100  Q
    |||| ||||||||||||||||||| || |||||| |||||||| ||||||||||||||    
T  21859103 ccgtacccgtgatggattttacccacgagtacccgtgggcatgtgtatttttgccacc 21859046  T

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Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 43 - 105
Target Start/End: Complemental strand, 778414 - 778352
Alignment:
Q  43 ccgtgcccgtgatggattttacccgcgggtacccatgggcatgggtatttttgccacccctaa 105  Q
    ||||| ||||||||||| |||||| |  |||||| ||| |||||||||||||| |||||||||    
T  778414 ccgtgtccgtgatggatattacccacatgtacccgtggacatgggtatttttggcacccctaa 778352  T

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Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 66
Target Start/End: Original strand, 43127421 - 43127470
Alignment:
Q  18 catggatacccgtttagctacccgtcc-gtgcccgtgatggattttaccc 66  Q
    |||||||||||| ||||||| |||||| |||||||||| |||||||||||    
T  43127421 catggatacccgcttagctatccgtcccgtgcccgtgacggattttaccc 43127470  T

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Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 105
Target Start/End: Original strand, 43127466 - 43127499
Alignment:
Q  72 tacccatgggcatgggtatttttgccacccctaa 105  Q
    ||||||||||||||||||||||| ||||||||||    
T  43127466 tacccatgggcatgggtatttttaccacccctaa 43127499  T

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Target: chr2 (Bit Score: 87; Significance: 1e-41; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 18 - 104
Target Start/End: Original strand, 15696934 - 15697020
Alignment:
Q  18 catggatacccgtttagctacccgtccgtgcccgtgatggattttacccgcgggtacccatgggcatgggtatttttgccaccccta 104  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15696934 catggatacccgtttagctacccgtccgtgcccgtgatggattttacccgcgggtacccatgggcatgggtatttttgccaccccta 15697020  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 43 - 101
Target Start/End: Complemental strand, 12698635 - 12698577
Alignment:
Q  43 ccgtgcccgtgatggattttacccgcgggtacccatgggcatgggtatttttgccaccc 101  Q
    |||||||||||| |||||||| || ||||||||| |||||||| |||||||||| ||||    
T  12698635 ccgtgcccgtgacggattttatccacgggtacccgtgggcatgagtatttttgctaccc 12698577  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 24 - 106
Target Start/End: Original strand, 15676304 - 15676387
Alignment:
Q  24 tacccgtttagctacccgtccg-tgcccgtgatggattttacccgcgggtacccatgggcatgggtatttttgccacccctaat 106  Q
    |||||||||||||||| | ||  ||||| ||| ||||||||||| ||| ||||  ||| |||||||| ||||||||||||||||    
T  15676304 tacccgtttagctacctgccctatgcccctgacggattttacccacggataccagtggacatgggtacttttgccacccctaat 15676387  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 101
Target Start/End: Complemental strand, 4622444 - 4622371
Alignment:
Q  29 gtttagctacccgtcc-gtgcccgtgatggattttacccgcgggtacccatgggcatgggtatttttgccaccc 101  Q
    ||||||||||||| || || ||||||   |||||||||| | ||||| ||||||| ||||||||||||||||||    
T  4622444 gtttagctacccgccccgtacccgtggcagattttacccacaggtactcatgggcttgggtatttttgccaccc 4622371  T

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Target: chr6 (Bit Score: 47; Significance: 8e-18; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 20 - 101
Target Start/End: Complemental strand, 4333604 - 4333522
Alignment:
Q  20 tggatacccgtttagctacccgtcc-gtgcccgtgatggattttacccgcgggtacccatgggcatgggtatttttgccaccc 101  Q
    |||||||||||||||||||| | || |||  ||||||||||||||||| | | ||||||||||||||||||||||||||||||    
T  4333604 tggatacccgtttagctacctgccccgtgttcgtgatggattttacccaccgatacccatgggcatgggtatttttgccaccc 4333522  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 49 - 104
Target Start/End: Complemental strand, 9578540 - 9578485
Alignment:
Q  49 ccgtgatggattttacccgcgggtacccatgggcatgggtatttttgccaccccta 104  Q
    |||||| ||||||||||| |||||||||| || |||| |||||||| |||||||||    
T  9578540 ccgtgacggattttacccacgggtacccacggccatgagtattttttccaccccta 9578485  T

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Target: scaffold0057 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 46 - 102
Target Start/End: Original strand, 50118 - 50174
Alignment:
Q  46 tgcccgtgatggattttacccgcgggtacccatgggcatgggtatttttgccacccc 102  Q
    ||||| ||| ||||||||||| ||||||||| |||||||||||||||||||||||||    
T  50118 tgcccatgacggattttacccacgggtacccgtgggcatgggtatttttgccacccc 50174  T

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